Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4061

Experiment: perchlorate 150 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4060 and Shewana3_4061 are separated by 266 nucleotidesShewana3_4061 and Shewana3_4062 are separated by 49 nucleotidesShewana3_4062 and Shewana3_4063 are separated by 106 nucleotidesShewana3_4063 and Shewana3_4064 are separated by 144 nucleotides Shewana3_4060: Shewana3_4060 - malate synthase (RefSeq), at 4,880,082 to 4,880,645 _4060 Shewana3_4061: Shewana3_4061 - hypothetical protein (RefSeq), at 4,880,912 to 4,881,862 _4061 Shewana3_4062: Shewana3_4062 - hypothetical protein (RefSeq), at 4,881,912 to 4,882,064 _4062 Shewana3_4063: Shewana3_4063 - LuxR family transcriptional regulator (RefSeq), at 4,882,171 to 4,882,716 _4063 Shewana3_4064: Shewana3_4064 - hypothetical protein (RefSeq), at 4,882,861 to 4,884,063 _4064 Position (kb) 4880 4881 4882Strain fitness (log2 ratio) -1 0 1 2at 4879.955 kb on + strandat 4879.979 kb on + strandat 4879.979 kb on + strandat 4879.979 kb on + strandat 4879.981 kb on + strandat 4880.065 kb on + strandat 4880.067 kb on + strandat 4880.072 kb on + strandat 4880.080 kb on - strandat 4880.231 kb on + strand, within Shewana3_4060at 4880.260 kb on + strand, within Shewana3_4060at 4880.353 kb on + strand, within Shewana3_4060at 4880.387 kb on - strand, within Shewana3_4060at 4880.396 kb on - strand, within Shewana3_4060at 4880.435 kb on - strand, within Shewana3_4060at 4880.435 kb on - strand, within Shewana3_4060at 4880.435 kb on - strand, within Shewana3_4060at 4880.909 kb on - strandat 4880.983 kb on - strandat 4880.983 kb on - strandat 4881.042 kb on + strand, within Shewana3_4061at 4881.050 kb on - strand, within Shewana3_4061at 4881.088 kb on + strand, within Shewana3_4061at 4881.131 kb on + strand, within Shewana3_4061at 4881.234 kb on + strand, within Shewana3_4061at 4881.370 kb on + strand, within Shewana3_4061at 4881.466 kb on - strand, within Shewana3_4061at 4881.536 kb on - strand, within Shewana3_4061at 4881.553 kb on + strand, within Shewana3_4061at 4881.556 kb on - strand, within Shewana3_4061at 4881.607 kb on + strand, within Shewana3_4061at 4881.852 kb on + strandat 4881.909 kb on + strandat 4881.917 kb on - strandat 4881.917 kb on - strandat 4881.917 kb on - strandat 4881.917 kb on - strandat 4881.987 kb on + strand, within Shewana3_4062at 4882.172 kb on - strandat 4882.533 kb on - strand, within Shewana3_4063at 4882.605 kb on - strand, within Shewana3_4063at 4882.681 kb on - strandat 4882.681 kb on - strandat 4882.812 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
remove
4,879,955 + -0.5
4,879,979 + -0.4
4,879,979 + -0.5
4,879,979 + -0.1
4,879,981 + -0.4
4,880,065 + -0.3
4,880,067 + -0.1
4,880,072 + -0.2
4,880,080 - -0.5
4,880,231 + Shewana3_4060 0.26 -0.5
4,880,260 + Shewana3_4060 0.32 +0.1
4,880,353 + Shewana3_4060 0.48 -0.0
4,880,387 - Shewana3_4060 0.54 -0.3
4,880,396 - Shewana3_4060 0.56 +0.2
4,880,435 - Shewana3_4060 0.63 -0.1
4,880,435 - Shewana3_4060 0.63 +0.1
4,880,435 - Shewana3_4060 0.63 -0.6
4,880,909 - -0.1
4,880,983 - +0.1
4,880,983 - -0.0
4,881,042 + Shewana3_4061 0.14 -0.4
4,881,050 - Shewana3_4061 0.15 -0.3
4,881,088 + Shewana3_4061 0.19 -0.3
4,881,131 + Shewana3_4061 0.23 -0.2
4,881,234 + Shewana3_4061 0.34 -0.2
4,881,370 + Shewana3_4061 0.48 -0.1
4,881,466 - Shewana3_4061 0.58 -0.5
4,881,536 - Shewana3_4061 0.66 +0.0
4,881,553 + Shewana3_4061 0.67 -0.1
4,881,556 - Shewana3_4061 0.68 -0.1
4,881,607 + Shewana3_4061 0.73 -0.3
4,881,852 + -0.2
4,881,909 + -0.1
4,881,917 - -0.4
4,881,917 - +0.4
4,881,917 - +1.9
4,881,917 - -0.6
4,881,987 + Shewana3_4062 0.49 -0.3
4,882,172 - +0.2
4,882,533 - Shewana3_4063 0.66 -0.2
4,882,605 - Shewana3_4063 0.79 +0.0
4,882,681 - -0.3
4,882,681 - -0.0
4,882,812 - +0.0

Or see this region's nucleotide sequence