Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3221

Experiment: perchlorate 150 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_3220 and Shewana3_3221 are separated by 76 nucleotidesShewana3_3221 and Shewana3_3222 are separated by 293 nucleotides Shewana3_3220: Shewana3_3220 - polyprenyl synthetase (RefSeq), at 3,862,811 to 3,863,806 _3220 Shewana3_3221: Shewana3_3221 - uracil-DNA glycosylase (RefSeq), at 3,863,883 to 3,864,548 _3221 Shewana3_3222: Shewana3_3222 - hypothetical protein (RefSeq), at 3,864,842 to 3,865,276 _3222 Position (kb) 3863 3864 3865Strain fitness (log2 ratio) -2 -1 0 1at 3863.974 kb on + strand, within Shewana3_3221at 3864.155 kb on - strand, within Shewana3_3221at 3864.166 kb on - strand, within Shewana3_3221at 3864.184 kb on - strand, within Shewana3_3221at 3864.189 kb on - strand, within Shewana3_3221at 3864.638 kb on - strandat 3864.749 kb on - strandat 3864.749 kb on - strandat 3864.896 kb on + strand, within Shewana3_3222at 3864.942 kb on - strand, within Shewana3_3222at 3864.975 kb on + strand, within Shewana3_3222at 3865.089 kb on + strand, within Shewana3_3222at 3865.089 kb on + strand, within Shewana3_3222at 3865.302 kb on + strandat 3865.378 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
remove
3,863,974 + Shewana3_3221 0.14 +0.1
3,864,155 - Shewana3_3221 0.41 +0.0
3,864,166 - Shewana3_3221 0.42 -0.2
3,864,184 - Shewana3_3221 0.45 -0.8
3,864,189 - Shewana3_3221 0.46 +0.7
3,864,638 - -0.4
3,864,749 - +0.2
3,864,749 - -0.4
3,864,896 + Shewana3_3222 0.12 +0.1
3,864,942 - Shewana3_3222 0.23 -1.9
3,864,975 + Shewana3_3222 0.31 +0.7
3,865,089 + Shewana3_3222 0.57 +0.0
3,865,089 + Shewana3_3222 0.57 +0.0
3,865,302 + +0.0
3,865,378 + +0.4

Or see this region's nucleotide sequence