Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3096 and Shewana3_3097 are separated by 159 nucleotides Shewana3_3097 and Shewana3_3098 are separated by 554 nucleotides
Shewana3_3096: Shewana3_3096 - spermidine/putrescine ABC transporter ATPase subunit (RefSeq), at 3,713,741 to 3,714,877
_3096
Shewana3_3097: Shewana3_3097 - extracellular solute-binding protein (RefSeq), at 3,715,037 to 3,716,200
_3097
Shewana3_3098: Shewana3_3098 - L-glutamine synthetase (RefSeq), at 3,716,755 to 3,718,110
_3098
Position (kb)
3715
3716
3717 Strain fitness (log2 ratio)
-1
0
1
2 at 3714.118 kb on - strand, within Shewana3_3096 at 3714.154 kb on - strand, within Shewana3_3096 at 3714.195 kb on - strand, within Shewana3_3096 at 3714.267 kb on - strand, within Shewana3_3096 at 3714.367 kb on + strand, within Shewana3_3096 at 3714.796 kb on - strand at 3714.810 kb on + strand at 3714.818 kb on - strand at 3714.859 kb on + strand at 3715.078 kb on - strand at 3715.184 kb on - strand, within Shewana3_3097 at 3715.206 kb on + strand, within Shewana3_3097 at 3715.214 kb on - strand, within Shewana3_3097 at 3715.686 kb on + strand, within Shewana3_3097 at 3715.806 kb on + strand, within Shewana3_3097 at 3715.806 kb on + strand, within Shewana3_3097 at 3715.907 kb on + strand, within Shewana3_3097 at 3715.915 kb on - strand, within Shewana3_3097 at 3716.013 kb on - strand, within Shewana3_3097 at 3716.020 kb on - strand, within Shewana3_3097 at 3716.201 kb on - strand at 3716.292 kb on - strand at 3716.708 kb on - strand at 3716.925 kb on - strand, within Shewana3_3098 at 3716.993 kb on - strand, within Shewana3_3098 at 3716.993 kb on - strand, within Shewana3_3098 at 3717.033 kb on - strand, within Shewana3_3098 at 3717.133 kb on - strand, within Shewana3_3098
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 3,714,118 - Shewana3_3096 0.33 -0.1 3,714,154 - Shewana3_3096 0.36 -0.1 3,714,195 - Shewana3_3096 0.40 +0.1 3,714,267 - Shewana3_3096 0.46 +2.0 3,714,367 + Shewana3_3096 0.55 +0.5 3,714,796 - +0.1 3,714,810 + +0.0 3,714,818 - -0.6 3,714,859 + +0.3 3,715,078 - -0.3 3,715,184 - Shewana3_3097 0.13 -0.2 3,715,206 + Shewana3_3097 0.15 +0.7 3,715,214 - Shewana3_3097 0.15 -0.1 3,715,686 + Shewana3_3097 0.56 -0.2 3,715,806 + Shewana3_3097 0.66 -0.0 3,715,806 + Shewana3_3097 0.66 +1.6 3,715,907 + Shewana3_3097 0.75 -0.0 3,715,915 - Shewana3_3097 0.75 -0.3 3,716,013 - Shewana3_3097 0.84 +0.4 3,716,020 - Shewana3_3097 0.84 +0.1 3,716,201 - -0.2 3,716,292 - +0.0 3,716,708 - -1.0 3,716,925 - Shewana3_3098 0.13 -0.0 3,716,993 - Shewana3_3098 0.18 +0.2 3,716,993 - Shewana3_3098 0.18 +0.4 3,717,033 - Shewana3_3098 0.21 -1.0 3,717,133 - Shewana3_3098 0.28 -0.4
Or see this region's nucleotide sequence