Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3094

Experiment: perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3093 and Shewana3_3094 are separated by 279 nucleotidesShewana3_3094 and Shewana3_3095 overlap by 4 nucleotidesShewana3_3095 and Shewana3_3096 overlap by 4 nucleotides Shewana3_3093: Shewana3_3093 - FAD dependent oxidoreductase (RefSeq), at 3,710,461 to 3,711,747 _3093 Shewana3_3094: Shewana3_3094 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,712,027 to 3,712,842 _3094 Shewana3_3095: Shewana3_3095 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,712,839 to 3,713,744 _3095 Shewana3_3096: Shewana3_3096 - spermidine/putrescine ABC transporter ATPase subunit (RefSeq), at 3,713,741 to 3,714,877 _3096 Position (kb) 3712 3713Strain fitness (log2 ratio) -1 0 1 2at 3711.070 kb on + strand, within Shewana3_3093at 3711.070 kb on + strand, within Shewana3_3093at 3711.072 kb on + strand, within Shewana3_3093at 3711.102 kb on - strand, within Shewana3_3093at 3711.174 kb on - strand, within Shewana3_3093at 3711.287 kb on - strand, within Shewana3_3093at 3711.556 kb on - strand, within Shewana3_3093at 3711.577 kb on - strand, within Shewana3_3093at 3711.587 kb on - strand, within Shewana3_3093at 3711.634 kb on - strandat 3711.636 kb on - strandat 3711.637 kb on - strandat 3711.681 kb on - strandat 3711.926 kb on + strandat 3712.103 kb on + strandat 3712.154 kb on - strand, within Shewana3_3094at 3712.247 kb on - strand, within Shewana3_3094at 3712.393 kb on + strand, within Shewana3_3094at 3712.460 kb on + strand, within Shewana3_3094at 3712.513 kb on - strand, within Shewana3_3094at 3712.565 kb on + strand, within Shewana3_3094at 3712.626 kb on + strand, within Shewana3_3094at 3712.634 kb on - strand, within Shewana3_3094at 3712.930 kb on - strand, within Shewana3_3095at 3713.012 kb on + strand, within Shewana3_3095at 3713.012 kb on + strand, within Shewana3_3095at 3713.012 kb on + strand, within Shewana3_3095at 3713.012 kb on + strand, within Shewana3_3095at 3713.062 kb on - strand, within Shewana3_3095at 3713.062 kb on - strand, within Shewana3_3095at 3713.403 kb on + strand, within Shewana3_3095at 3713.430 kb on + strand, within Shewana3_3095at 3713.503 kb on + strand, within Shewana3_3095at 3713.503 kb on + strand, within Shewana3_3095at 3713.503 kb on + strand, within Shewana3_3095at 3713.503 kb on + strand, within Shewana3_3095at 3713.567 kb on - strand, within Shewana3_3095

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
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3,711,070 + Shewana3_3093 0.47 -0.0
3,711,070 + Shewana3_3093 0.47 +0.3
3,711,072 + Shewana3_3093 0.47 +1.4
3,711,102 - Shewana3_3093 0.50 -0.4
3,711,174 - Shewana3_3093 0.55 +0.4
3,711,287 - Shewana3_3093 0.64 -0.0
3,711,556 - Shewana3_3093 0.85 +0.4
3,711,577 - Shewana3_3093 0.87 +0.0
3,711,587 - Shewana3_3093 0.87 -0.0
3,711,634 - -0.6
3,711,636 - -0.9
3,711,637 - -0.9
3,711,681 - +0.4
3,711,926 + +0.1
3,712,103 + -0.0
3,712,154 - Shewana3_3094 0.16 -0.3
3,712,247 - Shewana3_3094 0.27 -0.0
3,712,393 + Shewana3_3094 0.45 -0.8
3,712,460 + Shewana3_3094 0.53 +0.6
3,712,513 - Shewana3_3094 0.60 -0.6
3,712,565 + Shewana3_3094 0.66 -0.4
3,712,626 + Shewana3_3094 0.73 +2.3
3,712,634 - Shewana3_3094 0.74 -0.9
3,712,930 - Shewana3_3095 0.10 -0.2
3,713,012 + Shewana3_3095 0.19 -0.0
3,713,012 + Shewana3_3095 0.19 -0.0
3,713,012 + Shewana3_3095 0.19 -1.0
3,713,012 + Shewana3_3095 0.19 -0.0
3,713,062 - Shewana3_3095 0.25 -0.3
3,713,062 - Shewana3_3095 0.25 -0.1
3,713,403 + Shewana3_3095 0.62 -0.0
3,713,430 + Shewana3_3095 0.65 -1.3
3,713,503 + Shewana3_3095 0.73 -0.0
3,713,503 + Shewana3_3095 0.73 -0.5
3,713,503 + Shewana3_3095 0.73 -0.0
3,713,503 + Shewana3_3095 0.73 -1.0
3,713,567 - Shewana3_3095 0.80 +1.0

Or see this region's nucleotide sequence