Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3093 and Shewana3_3094 are separated by 279 nucleotides Shewana3_3094 and Shewana3_3095 overlap by 4 nucleotides Shewana3_3095 and Shewana3_3096 overlap by 4 nucleotides
Shewana3_3093: Shewana3_3093 - FAD dependent oxidoreductase (RefSeq), at 3,710,461 to 3,711,747
_3093
Shewana3_3094: Shewana3_3094 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,712,027 to 3,712,842
_3094
Shewana3_3095: Shewana3_3095 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,712,839 to 3,713,744
_3095
Shewana3_3096: Shewana3_3096 - spermidine/putrescine ABC transporter ATPase subunit (RefSeq), at 3,713,741 to 3,714,877
_3096
Position (kb)
3712
3713 Strain fitness (log2 ratio)
-1
0
1
2 at 3711.070 kb on + strand, within Shewana3_3093 at 3711.070 kb on + strand, within Shewana3_3093 at 3711.072 kb on + strand, within Shewana3_3093 at 3711.102 kb on - strand, within Shewana3_3093 at 3711.174 kb on - strand, within Shewana3_3093 at 3711.287 kb on - strand, within Shewana3_3093 at 3711.556 kb on - strand, within Shewana3_3093 at 3711.577 kb on - strand, within Shewana3_3093 at 3711.587 kb on - strand, within Shewana3_3093 at 3711.634 kb on - strand at 3711.636 kb on - strand at 3711.637 kb on - strand at 3711.681 kb on - strand at 3711.926 kb on + strand at 3712.103 kb on + strand at 3712.154 kb on - strand, within Shewana3_3094 at 3712.247 kb on - strand, within Shewana3_3094 at 3712.393 kb on + strand, within Shewana3_3094 at 3712.460 kb on + strand, within Shewana3_3094 at 3712.513 kb on - strand, within Shewana3_3094 at 3712.565 kb on + strand, within Shewana3_3094 at 3712.626 kb on + strand, within Shewana3_3094 at 3712.634 kb on - strand, within Shewana3_3094 at 3712.930 kb on - strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.012 kb on + strand, within Shewana3_3095 at 3713.062 kb on - strand, within Shewana3_3095 at 3713.062 kb on - strand, within Shewana3_3095 at 3713.403 kb on + strand, within Shewana3_3095 at 3713.430 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.503 kb on + strand, within Shewana3_3095 at 3713.567 kb on - strand, within Shewana3_3095
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 3,711,070 + Shewana3_3093 0.47 -0.0 3,711,070 + Shewana3_3093 0.47 +0.3 3,711,072 + Shewana3_3093 0.47 +1.4 3,711,102 - Shewana3_3093 0.50 -0.4 3,711,174 - Shewana3_3093 0.55 +0.4 3,711,287 - Shewana3_3093 0.64 -0.0 3,711,556 - Shewana3_3093 0.85 +0.4 3,711,577 - Shewana3_3093 0.87 +0.0 3,711,587 - Shewana3_3093 0.87 -0.0 3,711,634 - -0.6 3,711,636 - -0.9 3,711,637 - -0.9 3,711,681 - +0.4 3,711,926 + +0.1 3,712,103 + -0.0 3,712,154 - Shewana3_3094 0.16 -0.3 3,712,247 - Shewana3_3094 0.27 -0.0 3,712,393 + Shewana3_3094 0.45 -0.8 3,712,460 + Shewana3_3094 0.53 +0.6 3,712,513 - Shewana3_3094 0.60 -0.6 3,712,565 + Shewana3_3094 0.66 -0.4 3,712,626 + Shewana3_3094 0.73 +2.3 3,712,634 - Shewana3_3094 0.74 -0.9 3,712,930 - Shewana3_3095 0.10 -0.2 3,713,012 + Shewana3_3095 0.19 -0.0 3,713,012 + Shewana3_3095 0.19 -0.0 3,713,012 + Shewana3_3095 0.19 -1.0 3,713,012 + Shewana3_3095 0.19 -0.0 3,713,062 - Shewana3_3095 0.25 -0.3 3,713,062 - Shewana3_3095 0.25 -0.1 3,713,403 + Shewana3_3095 0.62 -0.0 3,713,430 + Shewana3_3095 0.65 -1.3 3,713,503 + Shewana3_3095 0.73 -0.0 3,713,503 + Shewana3_3095 0.73 -0.5 3,713,503 + Shewana3_3095 0.73 -0.0 3,713,503 + Shewana3_3095 0.73 -1.0 3,713,567 - Shewana3_3095 0.80 +1.0
Or see this region's nucleotide sequence