Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2492 and Shewana3_2493 are separated by 97 nucleotides Shewana3_2493 and Shewana3_2494 are separated by 34 nucleotides Shewana3_2494 and Shewana3_2495 are separated by 128 nucleotides
Shewana3_2492: Shewana3_2492 - peptidyl-dipeptidase Dcp (RefSeq), at 2,982,552 to 2,984,780
_2492
Shewana3_2493: Shewana3_2493 - GCN5-related N-acetyltransferase (RefSeq), at 2,984,878 to 2,985,375
_2493
Shewana3_2494: Shewana3_2494 - nitroreductase (RefSeq), at 2,985,410 to 2,985,958
_2494
Shewana3_2495: Shewana3_2495 - DoxX family protein (RefSeq), at 2,986,087 to 2,986,680
_2495
Position (kb)
2984
2985
2986 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2983.901 kb on + strand, within Shewana3_2492 at 2984.083 kb on + strand, within Shewana3_2492 at 2984.127 kb on - strand, within Shewana3_2492 at 2984.758 kb on + strand at 2984.909 kb on + strand at 2985.018 kb on - strand, within Shewana3_2493 at 2985.045 kb on - strand, within Shewana3_2493 at 2985.047 kb on + strand, within Shewana3_2493 at 2985.068 kb on + strand, within Shewana3_2493 at 2985.177 kb on - strand, within Shewana3_2493 at 2985.235 kb on - strand, within Shewana3_2493 at 2985.351 kb on + strand at 2985.409 kb on + strand at 2985.466 kb on + strand, within Shewana3_2494 at 2985.672 kb on - strand, within Shewana3_2494 at 2985.694 kb on + strand, within Shewana3_2494 at 2985.781 kb on + strand, within Shewana3_2494 at 2985.797 kb on + strand, within Shewana3_2494 at 2985.799 kb on - strand, within Shewana3_2494 at 2985.799 kb on - strand, within Shewana3_2494 at 2985.799 kb on - strand, within Shewana3_2494 at 2985.805 kb on - strand, within Shewana3_2494 at 2985.805 kb on - strand, within Shewana3_2494 at 2986.105 kb on - strand at 2986.150 kb on + strand, within Shewana3_2495 at 2986.220 kb on - strand, within Shewana3_2495 at 2986.239 kb on - strand, within Shewana3_2495
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 2,983,901 + Shewana3_2492 0.61 +0.7 2,984,083 + Shewana3_2492 0.69 +0.5 2,984,127 - Shewana3_2492 0.71 -0.3 2,984,758 + +0.3 2,984,909 + -0.3 2,985,018 - Shewana3_2493 0.28 -0.1 2,985,045 - Shewana3_2493 0.34 +0.4 2,985,047 + Shewana3_2493 0.34 -0.9 2,985,068 + Shewana3_2493 0.38 +1.4 2,985,177 - Shewana3_2493 0.60 +0.7 2,985,235 - Shewana3_2493 0.72 -0.6 2,985,351 + +0.7 2,985,409 + +2.9 2,985,466 + Shewana3_2494 0.10 -0.7 2,985,672 - Shewana3_2494 0.48 -0.8 2,985,694 + Shewana3_2494 0.52 +1.5 2,985,781 + Shewana3_2494 0.68 +1.7 2,985,797 + Shewana3_2494 0.70 +1.0 2,985,799 - Shewana3_2494 0.71 +0.8 2,985,799 - Shewana3_2494 0.71 +0.1 2,985,799 - Shewana3_2494 0.71 -0.0 2,985,805 - Shewana3_2494 0.72 -0.4 2,985,805 - Shewana3_2494 0.72 +0.4 2,986,105 - +0.1 2,986,150 + Shewana3_2495 0.11 -0.3 2,986,220 - Shewana3_2495 0.22 +0.6 2,986,239 - Shewana3_2495 0.26 +0.9
Or see this region's nucleotide sequence