Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2360

Experiment: perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2357 and Shewana3_2358 are separated by 155 nucleotidesShewana3_2358 and Shewana3_2359 are separated by 78 nucleotidesShewana3_2359 and Shewana3_2360 are separated by 77 nucleotidesShewana3_2360 and Shewana3_2361 overlap by 13 nucleotidesShewana3_2361 and Shewana3_2362 are separated by 223 nucleotides Shewana3_2357: Shewana3_2357 - hypothetical protein (RefSeq), at 2,837,073 to 2,837,285 _2357 Shewana3_2358: Shewana3_2358 - hypothetical protein (RefSeq), at 2,837,441 to 2,837,677 _2358 Shewana3_2359: Shewana3_2359 - transposase IS3/IS911 family protein (RefSeq), at 2,837,756 to 2,838,001 _2359 Shewana3_2360: Shewana3_2360 - IS3 family transposase (RefSeq), at 2,838,079 to 2,838,426 _2360 Shewana3_2361: Shewana3_2361 - integrase catalytic subunit (RefSeq), at 2,838,414 to 2,838,917 _2361 Shewana3_2362: Shewana3_2362 - NnrS family protein (RefSeq), at 2,839,141 to 2,840,352 _2362 Position (kb) 2838 2839Strain fitness (log2 ratio) -1 0 1 2at 2837.134 kb on - strand, within Shewana3_2357at 2837.207 kb on + strand, within Shewana3_2357at 2837.259 kb on + strand, within Shewana3_2357at 2837.754 kb on - strandat 2837.874 kb on + strand, within Shewana3_2359at 2837.936 kb on - strand, within Shewana3_2359at 2838.104 kb on + strandat 2838.429 kb on + strandat 2838.588 kb on + strand, within Shewana3_2361at 2838.664 kb on + strand, within Shewana3_2361at 2838.902 kb on - strandat 2838.932 kb on + strandat 2839.044 kb on + strandat 2839.344 kb on - strand, within Shewana3_2362

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
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2,837,134 - Shewana3_2357 0.29 -0.3
2,837,207 + Shewana3_2357 0.63 -0.3
2,837,259 + Shewana3_2357 0.87 -0.3
2,837,754 - -0.3
2,837,874 + Shewana3_2359 0.48 -0.3
2,837,936 - Shewana3_2359 0.73 +1.9
2,838,104 + +0.3
2,838,429 + +0.6
2,838,588 + Shewana3_2361 0.35 -0.3
2,838,664 + Shewana3_2361 0.50 -0.3
2,838,902 - -0.3
2,838,932 + -1.3
2,839,044 + -1.3
2,839,344 - Shewana3_2362 0.17 +0.7

Or see this region's nucleotide sequence