Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2349

Experiment: perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2347 and Shewana3_2348 are separated by 44 nucleotidesShewana3_2348 and Shewana3_2349 overlap by 8 nucleotidesShewana3_2349 and Shewana3_2350 are separated by 18 nucleotidesShewana3_2350 and Shewana3_2351 are separated by 60 nucleotides Shewana3_2347: Shewana3_2347 - RND family efflux transporter MFP subunit (RefSeq), at 2,825,448 to 2,826,572 _2347 Shewana3_2348: Shewana3_2348 - cytochrome c biogenesis protein, transmembrane region (RefSeq), at 2,826,617 to 2,827,315 _2348 Shewana3_2349: Shewana3_2349 - hypothetical protein (RefSeq), at 2,827,308 to 2,827,841 _2349 Shewana3_2350: Shewana3_2350 - redox-active disulfide protein 2 (RefSeq), at 2,827,860 to 2,828,102 _2350 Shewana3_2351: Shewana3_2351 - ArsR family transcriptional regulator (RefSeq), at 2,828,163 to 2,828,471 _2351 Position (kb) 2827 2828Strain fitness (log2 ratio) -3 -2 -1 0 1at 2826.317 kb on + strand, within Shewana3_2347at 2826.594 kb on - strandat 2826.930 kb on - strand, within Shewana3_2348at 2827.176 kb on - strand, within Shewana3_2348at 2827.277 kb on + strandat 2827.430 kb on + strand, within Shewana3_2349at 2827.458 kb on + strand, within Shewana3_2349at 2827.500 kb on + strand, within Shewana3_2349at 2827.656 kb on - strand, within Shewana3_2349at 2827.782 kb on + strand, within Shewana3_2349at 2827.782 kb on + strand, within Shewana3_2349at 2827.782 kb on + strand, within Shewana3_2349at 2827.806 kb on + strandat 2828.079 kb on - strandat 2828.314 kb on + strand, within Shewana3_2351at 2828.432 kb on - strand, within Shewana3_2351at 2828.507 kb on - strandat 2828.516 kb on + strandat 2828.631 kb on + strandat 2828.631 kb on + strandat 2828.639 kb on - strandat 2828.653 kb on + strandat 2828.661 kb on - strandat 2828.661 kb on - strandat 2828.698 kb on - strandat 2828.812 kb on + strandat 2828.822 kb on + strandat 2828.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
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2,826,317 + Shewana3_2347 0.77 -0.3
2,826,594 - -1.8
2,826,930 - Shewana3_2348 0.45 -0.3
2,827,176 - Shewana3_2348 0.80 -2.8
2,827,277 + -1.2
2,827,430 + Shewana3_2349 0.23 +0.7
2,827,458 + Shewana3_2349 0.28 -0.3
2,827,500 + Shewana3_2349 0.36 -0.3
2,827,656 - Shewana3_2349 0.65 -1.3
2,827,782 + Shewana3_2349 0.89 -0.3
2,827,782 + Shewana3_2349 0.89 -0.3
2,827,782 + Shewana3_2349 0.89 -0.3
2,827,806 + -1.3
2,828,079 - -0.7
2,828,314 + Shewana3_2351 0.49 -0.3
2,828,432 - Shewana3_2351 0.87 -1.3
2,828,507 - -1.8
2,828,516 + -0.3
2,828,631 + -0.3
2,828,631 + -0.3
2,828,639 - -0.3
2,828,653 + -0.3
2,828,661 - +0.2
2,828,661 - -0.3
2,828,698 - -1.3
2,828,812 + -0.3
2,828,822 + +0.4
2,828,841 - -0.3

Or see this region's nucleotide sequence