Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2088 and Shewana3_2089 are separated by 522 nucleotides Shewana3_2089 and Shewana3_2090 are separated by 2 nucleotides Shewana3_2090 and Shewana3_2091 overlap by 4 nucleotides
Shewana3_2088: Shewana3_2088 - L-arabinolactonase (EC 3.1.1.15) (from data) , at 2,505,356 to 2,506,258
_2088
Shewana3_2089: Shewana3_2089 - formate dehydrogenase alpha subunit (RefSeq), at 2,506,781 to 2,509,798
_2089
Shewana3_2090: Shewana3_2090 - formate dehydrogenase beta subunit (RefSeq), at 2,509,801 to 2,510,703
_2090
Shewana3_2091: Shewana3_2091 - formate dehydrogenase gamma subunit (RefSeq), at 2,510,700 to 2,511,323
_2091
Position (kb)
2506
2507
2508
2509
2510 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2505.826 kb on + strand, within Shewana3_2088 at 2506.046 kb on + strand, within Shewana3_2088 at 2506.304 kb on + strand at 2507.058 kb on + strand at 2507.169 kb on - strand, within Shewana3_2089 at 2507.180 kb on - strand, within Shewana3_2089 at 2507.253 kb on + strand, within Shewana3_2089 at 2507.253 kb on + strand, within Shewana3_2089 at 2507.367 kb on + strand, within Shewana3_2089 at 2507.367 kb on + strand, within Shewana3_2089 at 2507.375 kb on - strand, within Shewana3_2089 at 2507.419 kb on + strand, within Shewana3_2089 at 2507.612 kb on + strand, within Shewana3_2089 at 2507.686 kb on - strand, within Shewana3_2089 at 2507.822 kb on + strand, within Shewana3_2089 at 2507.831 kb on + strand, within Shewana3_2089 at 2507.839 kb on - strand, within Shewana3_2089 at 2507.839 kb on - strand, within Shewana3_2089 at 2507.853 kb on + strand, within Shewana3_2089 at 2508.009 kb on + strand, within Shewana3_2089 at 2508.021 kb on + strand, within Shewana3_2089 at 2508.224 kb on + strand, within Shewana3_2089 at 2508.289 kb on - strand, within Shewana3_2089 at 2508.671 kb on + strand, within Shewana3_2089 at 2508.895 kb on + strand, within Shewana3_2089 at 2509.119 kb on + strand, within Shewana3_2089 at 2509.142 kb on - strand, within Shewana3_2089 at 2509.166 kb on - strand, within Shewana3_2089 at 2509.297 kb on + strand, within Shewana3_2089 at 2509.329 kb on + strand, within Shewana3_2089 at 2509.563 kb on + strand at 2509.599 kb on - strand at 2509.722 kb on - strand at 2510.103 kb on - strand, within Shewana3_2090 at 2510.108 kb on - strand, within Shewana3_2090 at 2510.128 kb on - strand, within Shewana3_2090 at 2510.132 kb on + strand, within Shewana3_2090 at 2510.426 kb on + strand, within Shewana3_2090 at 2510.569 kb on + strand, within Shewana3_2090
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 2,505,826 + Shewana3_2088 0.52 +1.2 2,506,046 + Shewana3_2088 0.76 -0.1 2,506,304 + -0.1 2,507,058 + -0.5 2,507,169 - Shewana3_2089 0.13 -0.9 2,507,180 - Shewana3_2089 0.13 +1.3 2,507,253 + Shewana3_2089 0.16 -1.1 2,507,253 + Shewana3_2089 0.16 -0.1 2,507,367 + Shewana3_2089 0.19 -0.1 2,507,367 + Shewana3_2089 0.19 +2.5 2,507,375 - Shewana3_2089 0.20 +0.9 2,507,419 + Shewana3_2089 0.21 -0.1 2,507,612 + Shewana3_2089 0.28 -0.1 2,507,686 - Shewana3_2089 0.30 -2.1 2,507,822 + Shewana3_2089 0.34 +0.9 2,507,831 + Shewana3_2089 0.35 +0.5 2,507,839 - Shewana3_2089 0.35 -0.1 2,507,839 - Shewana3_2089 0.35 +1.5 2,507,853 + Shewana3_2089 0.36 -0.1 2,508,009 + Shewana3_2089 0.41 -0.1 2,508,021 + Shewana3_2089 0.41 -0.1 2,508,224 + Shewana3_2089 0.48 -0.1 2,508,289 - Shewana3_2089 0.50 -0.1 2,508,671 + Shewana3_2089 0.63 -0.1 2,508,895 + Shewana3_2089 0.70 -0.1 2,509,119 + Shewana3_2089 0.77 -1.1 2,509,142 - Shewana3_2089 0.78 -0.1 2,509,166 - Shewana3_2089 0.79 +0.9 2,509,297 + Shewana3_2089 0.83 +0.5 2,509,329 + Shewana3_2089 0.84 -0.1 2,509,563 + -0.1 2,509,599 - -1.7 2,509,722 - +1.2 2,510,103 - Shewana3_2090 0.33 -0.1 2,510,108 - Shewana3_2090 0.34 +0.9 2,510,128 - Shewana3_2090 0.36 -0.1 2,510,132 + Shewana3_2090 0.37 -0.1 2,510,426 + Shewana3_2090 0.69 -0.2 2,510,569 + Shewana3_2090 0.85 +2.5
Or see this region's nucleotide sequence