Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1699 and Shewana3_1700 are separated by 155 nucleotides Shewana3_1700 and Shewana3_1701 are separated by 268 nucleotides Shewana3_1701 and Shewana3_1702 are separated by 159 nucleotides
Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697
_1699
Shewana3_1700: Shewana3_1700 - hypothetical protein (RefSeq), at 1,998,853 to 1,999,071
_1700
Shewana3_1701: Shewana3_1701 - hypothetical protein (RefSeq), at 1,999,340 to 1,999,672
_1701
Shewana3_1702: Shewana3_1702 - acriflavin resistance protein (RefSeq), at 1,999,832 to 2,002,888
_1702
Position (kb)
1999
2000 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1998.376 kb on - strand, within Shewana3_1699 at 1998.383 kb on + strand, within Shewana3_1699 at 1998.391 kb on - strand, within Shewana3_1699 at 1998.406 kb on + strand, within Shewana3_1699 at 1998.452 kb on + strand, within Shewana3_1699 at 1998.516 kb on - strand, within Shewana3_1699 at 1998.516 kb on - strand, within Shewana3_1699 at 1998.817 kb on + strand at 1998.858 kb on - strand at 1998.865 kb on + strand at 1998.871 kb on - strand at 1998.981 kb on + strand, within Shewana3_1700 at 1998.981 kb on + strand, within Shewana3_1700 at 1999.037 kb on + strand, within Shewana3_1700 at 1999.553 kb on - strand, within Shewana3_1701 at 1999.606 kb on - strand, within Shewana3_1701 at 1999.847 kb on - strand at 1999.880 kb on - strand at 1999.910 kb on + strand at 1999.916 kb on - strand at 1999.918 kb on - strand at 1999.962 kb on - strand at 2000.078 kb on + strand at 2000.167 kb on - strand, within Shewana3_1702 at 2000.247 kb on + strand, within Shewana3_1702 at 2000.497 kb on + strand, within Shewana3_1702
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 1,998,376 - Shewana3_1699 0.79 +0.7 1,998,383 + Shewana3_1699 0.80 -0.7 1,998,391 - Shewana3_1699 0.80 -0.2 1,998,406 + Shewana3_1699 0.81 +0.2 1,998,452 + Shewana3_1699 0.84 +0.1 1,998,516 - Shewana3_1699 0.88 -0.2 1,998,516 - Shewana3_1699 0.88 +1.4 1,998,817 + -0.2 1,998,858 - -0.5 1,998,865 + -0.2 1,998,871 - +0.4 1,998,981 + Shewana3_1700 0.58 -2.2 1,998,981 + Shewana3_1700 0.58 -0.2 1,999,037 + Shewana3_1700 0.84 -0.2 1,999,553 - Shewana3_1701 0.64 +0.4 1,999,606 - Shewana3_1701 0.80 +2.1 1,999,847 - +0.8 1,999,880 - -1.0 1,999,910 + +0.4 1,999,916 - -0.4 1,999,918 - -0.5 1,999,962 - +0.7 2,000,078 + -0.2 2,000,167 - Shewana3_1702 0.11 +0.8 2,000,247 + Shewana3_1702 0.14 -0.2 2,000,497 + Shewana3_1702 0.22 -0.2
Or see this region's nucleotide sequence