Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1698 and Shewana3_1699 are separated by 342 nucleotides Shewana3_1699 and Shewana3_1700 are separated by 155 nucleotides Shewana3_1700 and Shewana3_1701 are separated by 268 nucleotides
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697
_1699
Shewana3_1700: Shewana3_1700 - hypothetical protein (RefSeq), at 1,998,853 to 1,999,071
_1700
Shewana3_1701: Shewana3_1701 - hypothetical protein (RefSeq), at 1,999,340 to 1,999,672
_1701
Position (kb)
1997
1998
1999 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1996.546 kb on - strand, within Shewana3_1698 at 1997.196 kb on - strand at 1997.413 kb on + strand, within Shewana3_1699 at 1997.435 kb on + strand, within Shewana3_1699 at 1997.445 kb on + strand, within Shewana3_1699 at 1997.465 kb on - strand, within Shewana3_1699 at 1997.592 kb on + strand, within Shewana3_1699 at 1998.154 kb on + strand, within Shewana3_1699 at 1998.282 kb on + strand, within Shewana3_1699 at 1998.376 kb on - strand, within Shewana3_1699 at 1998.383 kb on + strand, within Shewana3_1699 at 1998.391 kb on - strand, within Shewana3_1699 at 1998.406 kb on + strand, within Shewana3_1699 at 1998.452 kb on + strand, within Shewana3_1699 at 1998.516 kb on - strand, within Shewana3_1699 at 1998.516 kb on - strand, within Shewana3_1699 at 1998.817 kb on + strand at 1998.858 kb on - strand at 1998.865 kb on + strand at 1998.871 kb on - strand at 1998.981 kb on + strand, within Shewana3_1700 at 1998.981 kb on + strand, within Shewana3_1700 at 1999.037 kb on + strand, within Shewana3_1700 at 1999.553 kb on - strand, within Shewana3_1701 at 1999.606 kb on - strand, within Shewana3_1701
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 1,996,546 - Shewana3_1698 0.73 -0.2 1,997,196 - -0.4 1,997,413 + Shewana3_1699 0.18 -1.4 1,997,435 + Shewana3_1699 0.19 +1.1 1,997,445 + Shewana3_1699 0.20 -0.2 1,997,465 - Shewana3_1699 0.21 -1.2 1,997,592 + Shewana3_1699 0.29 -0.6 1,998,154 + Shewana3_1699 0.65 +1.8 1,998,282 + Shewana3_1699 0.73 +1.1 1,998,376 - Shewana3_1699 0.79 +0.7 1,998,383 + Shewana3_1699 0.80 -0.7 1,998,391 - Shewana3_1699 0.80 -0.2 1,998,406 + Shewana3_1699 0.81 +0.2 1,998,452 + Shewana3_1699 0.84 +0.1 1,998,516 - Shewana3_1699 0.88 -0.2 1,998,516 - Shewana3_1699 0.88 +1.4 1,998,817 + -0.2 1,998,858 - -0.5 1,998,865 + -0.2 1,998,871 - +0.4 1,998,981 + Shewana3_1700 0.58 -2.2 1,998,981 + Shewana3_1700 0.58 -0.2 1,999,037 + Shewana3_1700 0.84 -0.2 1,999,553 - Shewana3_1701 0.64 +0.4 1,999,606 - Shewana3_1701 0.80 +2.1
Or see this region's nucleotide sequence