Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1696 and Shewana3_1697 are separated by 81 nucleotides Shewana3_1697 and Shewana3_1698 are separated by 209 nucleotides Shewana3_1698 and Shewana3_1699 are separated by 342 nucleotides
Shewana3_1696: Shewana3_1696 - hypothetical protein (RefSeq), at 1,994,679 to 1,995,053
_1696
Shewana3_1697: Shewana3_1697 - cupin 2 domain-containing protein (RefSeq), at 1,995,135 to 1,995,674
_1697
Shewana3_1698: Shewana3_1698 - AraC family transcriptional regulator (RefSeq), at 1,995,884 to 1,996,792
_1698
Shewana3_1699: Shewana3_1699 - MATE efflux family protein (RefSeq), at 1,997,135 to 1,998,697
_1699
Position (kb)
1995
1996
1997 Strain fitness (log2 ratio)
-1
0
1
2 at 1994.965 kb on - strand, within Shewana3_1696 at 1995.049 kb on - strand at 1995.270 kb on + strand, within Shewana3_1697 at 1995.398 kb on + strand, within Shewana3_1697 at 1995.553 kb on + strand, within Shewana3_1697 at 1995.750 kb on - strand at 1996.072 kb on + strand, within Shewana3_1698 at 1996.080 kb on - strand, within Shewana3_1698 at 1996.088 kb on - strand, within Shewana3_1698 at 1996.546 kb on - strand, within Shewana3_1698 at 1997.196 kb on - strand at 1997.413 kb on + strand, within Shewana3_1699 at 1997.435 kb on + strand, within Shewana3_1699 at 1997.445 kb on + strand, within Shewana3_1699 at 1997.465 kb on - strand, within Shewana3_1699 at 1997.592 kb on + strand, within Shewana3_1699
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 1,994,965 - Shewana3_1696 0.76 -0.2 1,995,049 - -0.2 1,995,270 + Shewana3_1697 0.25 +1.6 1,995,398 + Shewana3_1697 0.49 -0.2 1,995,553 + Shewana3_1697 0.77 +0.6 1,995,750 - +0.2 1,996,072 + Shewana3_1698 0.21 +2.4 1,996,080 - Shewana3_1698 0.22 -0.2 1,996,088 - Shewana3_1698 0.22 -0.2 1,996,546 - Shewana3_1698 0.73 -0.2 1,997,196 - -0.4 1,997,413 + Shewana3_1699 0.18 -1.4 1,997,435 + Shewana3_1699 0.19 +1.1 1,997,445 + Shewana3_1699 0.20 -0.2 1,997,465 - Shewana3_1699 0.21 -1.2 1,997,592 + Shewana3_1699 0.29 -0.6
Or see this region's nucleotide sequence