Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1168

Experiment: perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1166 and Shewana3_1167 are separated by 45 nucleotidesShewana3_1167 and Shewana3_1168 overlap by 1 nucleotidesShewana3_1168 and Shewana3_1169 overlap by 4 nucleotides Shewana3_1166: Shewana3_1166 - deoxyribodipyrimidine photo-lyase type I (RefSeq), at 1,376,924 to 1,378,405 _1166 Shewana3_1167: Shewana3_1167 - transcriptional regulator-related protein (RefSeq), at 1,378,451 to 1,378,897 _1167 Shewana3_1168: Shewana3_1168 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,378,897 to 1,379,697 _1168 Shewana3_1169: Shewana3_1169 - amine oxidase (RefSeq), at 1,379,694 to 1,380,944 _1169 Position (kb) 1378 1379 1380Strain fitness (log2 ratio) -1 0 1 2at 1378.056 kb on - strand, within Shewana3_1166at 1378.065 kb on + strand, within Shewana3_1166at 1378.079 kb on - strand, within Shewana3_1166at 1378.122 kb on + strand, within Shewana3_1166at 1378.319 kb on + strandat 1378.323 kb on - strandat 1378.325 kb on + strandat 1378.333 kb on - strandat 1378.467 kb on + strandat 1378.549 kb on + strand, within Shewana3_1167at 1378.873 kb on + strandat 1378.882 kb on - strandat 1378.906 kb on + strandat 1378.920 kb on + strandat 1378.928 kb on - strandat 1378.930 kb on + strandat 1379.027 kb on - strand, within Shewana3_1168at 1379.058 kb on + strand, within Shewana3_1168at 1379.445 kb on - strand, within Shewana3_1168at 1379.675 kb on + strandat 1379.743 kb on + strandat 1379.977 kb on - strand, within Shewana3_1169at 1380.309 kb on + strand, within Shewana3_1169at 1380.311 kb on + strand, within Shewana3_1169at 1380.331 kb on + strand, within Shewana3_1169at 1380.339 kb on - strand, within Shewana3_1169at 1380.584 kb on + strand, within Shewana3_1169at 1380.584 kb on + strand, within Shewana3_1169at 1380.604 kb on - strand, within Shewana3_1169

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
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1,378,056 - Shewana3_1166 0.76 +0.9
1,378,065 + Shewana3_1166 0.77 +0.0
1,378,079 - Shewana3_1166 0.78 -0.9
1,378,122 + Shewana3_1166 0.81 +0.1
1,378,319 + +0.6
1,378,323 - -0.1
1,378,325 + -0.2
1,378,333 - +0.2
1,378,467 + -0.6
1,378,549 + Shewana3_1167 0.22 +0.2
1,378,873 + +0.5
1,378,882 - +0.2
1,378,906 + -0.0
1,378,920 + +0.3
1,378,928 - -0.3
1,378,930 + -0.5
1,379,027 - Shewana3_1168 0.16 +0.3
1,379,058 + Shewana3_1168 0.20 -0.2
1,379,445 - Shewana3_1168 0.68 -0.3
1,379,675 + +0.0
1,379,743 + +0.3
1,379,977 - Shewana3_1169 0.23 +0.6
1,380,309 + Shewana3_1169 0.49 +0.1
1,380,311 + Shewana3_1169 0.49 +1.3
1,380,331 + Shewana3_1169 0.51 +0.7
1,380,339 - Shewana3_1169 0.52 +0.1
1,380,584 + Shewana3_1169 0.71 -1.4
1,380,584 + Shewana3_1169 0.71 +0.1
1,380,604 - Shewana3_1169 0.73 +1.9

Or see this region's nucleotide sequence