Experiment: perchlorate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0827 and Shewana3_0828 are separated by 12 nucleotides Shewana3_0828 and Shewana3_0829 are separated by 78 nucleotides Shewana3_0829 and Shewana3_0830 are separated by 4 nucleotides Shewana3_0830 and Shewana3_0831 are separated by 15 nucleotides
Shewana3_0827: Shewana3_0827 - phage shock protein A, PspA (RefSeq), at 957,797 to 958,486
_0827
Shewana3_0828: Shewana3_0828 - hypothetical protein (RefSeq), at 958,499 to 958,912
_0828
Shewana3_0829: Shewana3_0829 - spermidine synthase (RefSeq), at 958,991 to 960,724
_0829
Shewana3_0830: Shewana3_0830 - hypothetical protein (RefSeq), at 960,729 to 961,628
_0830
Shewana3_0831: Shewana3_0831 - hypothetical protein (RefSeq), at 961,644 to 962,621
_0831
Position (kb) 958
959
960
961 Strain fitness (log2 ratio) -2
-1
0
1 at 958.002 kb on - strand at 958.366 kb on - strand, within Shewana3_0827 at 958.366 kb on - strand, within Shewana3_0827 at 958.432 kb on - strand at 958.531 kb on + strand at 958.539 kb on - strand at 958.555 kb on - strand, within Shewana3_0828 at 958.562 kb on + strand, within Shewana3_0828 at 958.622 kb on - strand, within Shewana3_0828 at 959.079 kb on - strand at 959.131 kb on + strand at 959.176 kb on + strand, within Shewana3_0829 at 959.217 kb on - strand, within Shewana3_0829 at 959.249 kb on - strand, within Shewana3_0829 at 959.263 kb on + strand, within Shewana3_0829 at 959.314 kb on - strand, within Shewana3_0829 at 959.339 kb on + strand, within Shewana3_0829 at 959.349 kb on + strand, within Shewana3_0829 at 959.428 kb on + strand, within Shewana3_0829 at 959.521 kb on + strand, within Shewana3_0829 at 959.743 kb on + strand, within Shewana3_0829 at 960.072 kb on - strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.112 kb on + strand, within Shewana3_0829 at 960.120 kb on - strand, within Shewana3_0829 at 960.180 kb on + strand, within Shewana3_0829 at 960.202 kb on - strand, within Shewana3_0829 at 960.202 kb on - strand, within Shewana3_0829 at 960.213 kb on + strand, within Shewana3_0829 at 960.421 kb on + strand, within Shewana3_0829 at 960.587 kb on - strand at 960.685 kb on - strand at 960.726 kb on + strand at 960.943 kb on + strand, within Shewana3_0830 at 961.188 kb on - strand, within Shewana3_0830 at 961.193 kb on - strand, within Shewana3_0830 at 961.332 kb on - strand, within Shewana3_0830 at 961.399 kb on + strand, within Shewana3_0830 at 961.402 kb on + strand, within Shewana3_0830 at 961.414 kb on + strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.424 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830 at 961.498 kb on - strand, within Shewana3_0830
Per-strain Table
Position Strand Gene LocusTag Fraction perchlorate 150 mM remove 958,002 - -0.9 958,366 - Shewana3_0827 0.82 -0.8 958,366 - Shewana3_0827 0.82 -1.1 958,432 - -1.5 958,531 + +0.1 958,539 - +0.1 958,555 - Shewana3_0828 0.14 +0.1 958,562 + Shewana3_0828 0.15 +0.1 958,622 - Shewana3_0828 0.30 +0.4 959,079 - -0.0 959,131 + -2.5 959,176 + Shewana3_0829 0.11 -0.6 959,217 - Shewana3_0829 0.13 -0.0 959,249 - Shewana3_0829 0.15 -0.2 959,263 + Shewana3_0829 0.16 -0.5 959,314 - Shewana3_0829 0.19 -0.3 959,339 + Shewana3_0829 0.20 -0.5 959,349 + Shewana3_0829 0.21 +0.7 959,428 + Shewana3_0829 0.25 -0.4 959,521 + Shewana3_0829 0.31 +0.3 959,743 + Shewana3_0829 0.43 -1.5 960,072 - Shewana3_0829 0.62 -1.3 960,112 + Shewana3_0829 0.65 -0.2 960,112 + Shewana3_0829 0.65 -1.5 960,112 + Shewana3_0829 0.65 +1.1 960,112 + Shewana3_0829 0.65 -0.9 960,112 + Shewana3_0829 0.65 +0.2 960,120 - Shewana3_0829 0.65 +0.0 960,180 + Shewana3_0829 0.69 -0.1 960,202 - Shewana3_0829 0.70 -0.3 960,202 - Shewana3_0829 0.70 -0.4 960,213 + Shewana3_0829 0.70 -1.3 960,421 + Shewana3_0829 0.82 +0.1 960,587 - -0.2 960,685 - -0.6 960,726 + -0.8 960,943 + Shewana3_0830 0.24 -0.3 961,188 - Shewana3_0830 0.51 -0.6 961,193 - Shewana3_0830 0.52 +0.6 961,332 - Shewana3_0830 0.67 -0.6 961,399 + Shewana3_0830 0.74 -0.3 961,402 + Shewana3_0830 0.75 +0.2 961,414 + Shewana3_0830 0.76 -0.1 961,424 - Shewana3_0830 0.77 +0.1 961,424 - Shewana3_0830 0.77 -0.5 961,498 - Shewana3_0830 0.85 -1.7 961,498 - Shewana3_0830 0.85 +0.1
Or see this region's nucleotide sequence