Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0764

Experiment: perchlorate 150 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0762 and Shewana3_0763 overlap by 1 nucleotidesShewana3_0763 and Shewana3_0764 are separated by 400 nucleotidesShewana3_0764 and Shewana3_0765 are separated by 184 nucleotides Shewana3_0762: Shewana3_0762 - hypothetical protein (RefSeq), at 883,977 to 884,555 _0762 Shewana3_0763: Shewana3_0763 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 884,555 to 885,088 _0763 Shewana3_0764: Shewana3_0764 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 885,489 to 887,351 _0764 Shewana3_0765: Shewana3_0765 - ribose-phosphate pyrophosphokinase (RefSeq), at 887,536 to 888,483 _0765 Position (kb) 885 886 887 888Strain fitness (log2 ratio) -2 -1 0 1at 884.782 kb on - strand, within Shewana3_0763at 884.830 kb on + strand, within Shewana3_0763at 884.838 kb on - strand, within Shewana3_0763at 884.838 kb on - strand, within Shewana3_0763at 884.838 kb on - strand, within Shewana3_0763at 884.868 kb on + strand, within Shewana3_0763at 884.899 kb on + strand, within Shewana3_0763at 884.964 kb on + strand, within Shewana3_0763at 884.964 kb on + strand, within Shewana3_0763at 884.972 kb on - strand, within Shewana3_0763at 884.996 kb on - strand, within Shewana3_0763at 885.046 kb on + strandat 885.100 kb on - strandat 885.109 kb on - strandat 885.156 kb on - strandat 885.167 kb on + strandat 885.343 kb on + strandat 885.489 kb on + strandat 885.517 kb on + strandat 885.517 kb on + strandat 885.601 kb on - strandat 885.690 kb on + strand, within Shewana3_0764at 885.711 kb on - strand, within Shewana3_0764at 885.802 kb on + strand, within Shewana3_0764at 885.802 kb on + strand, within Shewana3_0764at 885.802 kb on + strand, within Shewana3_0764at 885.810 kb on - strand, within Shewana3_0764at 885.810 kb on - strand, within Shewana3_0764at 885.931 kb on + strand, within Shewana3_0764at 885.993 kb on + strand, within Shewana3_0764at 885.996 kb on - strand, within Shewana3_0764at 886.059 kb on - strand, within Shewana3_0764at 886.064 kb on - strand, within Shewana3_0764at 886.218 kb on + strand, within Shewana3_0764at 886.218 kb on + strand, within Shewana3_0764at 886.226 kb on - strand, within Shewana3_0764at 886.926 kb on + strand, within Shewana3_0764at 886.934 kb on - strand, within Shewana3_0764at 887.024 kb on - strand, within Shewana3_0764at 887.190 kb on + strandat 887.203 kb on - strandat 887.408 kb on - strandat 887.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 150 mM
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884,782 - Shewana3_0763 0.43 -0.4
884,830 + Shewana3_0763 0.51 -1.8
884,838 - Shewana3_0763 0.53 -0.1
884,838 - Shewana3_0763 0.53 -0.1
884,838 - Shewana3_0763 0.53 -0.4
884,868 + Shewana3_0763 0.59 +0.2
884,899 + Shewana3_0763 0.64 -0.1
884,964 + Shewana3_0763 0.77 -0.4
884,964 + Shewana3_0763 0.77 +0.3
884,972 - Shewana3_0763 0.78 -0.2
884,996 - Shewana3_0763 0.83 -0.5
885,046 + +0.2
885,100 - +0.2
885,109 - +0.3
885,156 - -0.1
885,167 + +0.5
885,343 + -0.2
885,489 + -0.2
885,517 + +0.8
885,517 + -0.3
885,601 - +0.2
885,690 + Shewana3_0764 0.11 -0.3
885,711 - Shewana3_0764 0.12 +0.4
885,802 + Shewana3_0764 0.17 +0.2
885,802 + Shewana3_0764 0.17 -0.4
885,802 + Shewana3_0764 0.17 +0.2
885,810 - Shewana3_0764 0.17 +0.2
885,810 - Shewana3_0764 0.17 -0.7
885,931 + Shewana3_0764 0.24 -1.1
885,993 + Shewana3_0764 0.27 -0.5
885,996 - Shewana3_0764 0.27 -0.7
886,059 - Shewana3_0764 0.31 -1.7
886,064 - Shewana3_0764 0.31 +1.6
886,218 + Shewana3_0764 0.39 +0.3
886,218 + Shewana3_0764 0.39 -0.1
886,226 - Shewana3_0764 0.40 -0.2
886,926 + Shewana3_0764 0.77 -0.4
886,934 - Shewana3_0764 0.78 +0.2
887,024 - Shewana3_0764 0.82 -0.0
887,190 + +0.1
887,203 - -0.0
887,408 - +0.2
887,543 - -0.8

Or see this region's nucleotide sequence