Experiment: MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1974 and DVU1975 are separated by 71 nucleotides DVU1975 and groEL are separated by 194 nucleotides
DVU1974: DVU1974 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 2,047,840 to 2,048,943
DVU1974
DVU1975: DVU1975 - methyl-accepting chemotaxis protein (TIGR), at 2,049,015 to 2,050,763
DVU1975
DVU1976: groEL - chaperonin, 60 kDa (TIGR), at 2,050,958 to 2,052,601
groEL
Position (kb)
2049
2050
2051 Strain fitness (log2 ratio)
-1
0
1
2 at 2048.356 kb on + strand, within DVU1974 at 2048.395 kb on - strand, within DVU1974 at 2048.518 kb on + strand, within DVU1974 at 2048.615 kb on - strand, within DVU1974 at 2048.632 kb on + strand, within DVU1974 at 2048.642 kb on + strand, within DVU1974 at 2048.645 kb on - strand, within DVU1974 at 2048.647 kb on - strand, within DVU1974 at 2048.766 kb on + strand, within DVU1974 at 2048.774 kb on - strand, within DVU1974 at 2048.845 kb on + strand at 2048.903 kb on + strand at 2048.999 kb on - strand at 2049.021 kb on - strand at 2049.053 kb on - strand at 2049.072 kb on + strand at 2049.080 kb on - strand at 2049.105 kb on - strand at 2049.228 kb on - strand, within DVU1975 at 2049.323 kb on - strand, within DVU1975 at 2049.331 kb on + strand, within DVU1975 at 2049.465 kb on - strand, within DVU1975 at 2049.733 kb on - strand, within DVU1975 at 2049.842 kb on + strand, within DVU1975 at 2049.879 kb on - strand, within DVU1975 at 2049.967 kb on - strand, within DVU1975 at 2050.019 kb on - strand, within DVU1975 at 2050.019 kb on - strand, within DVU1975 at 2050.019 kb on - strand, within DVU1975 at 2050.026 kb on + strand, within DVU1975 at 2050.031 kb on - strand, within DVU1975 at 2050.034 kb on - strand, within DVU1975 at 2050.039 kb on - strand, within DVU1975 at 2050.045 kb on - strand, within DVU1975 at 2050.171 kb on - strand, within DVU1975 at 2050.296 kb on + strand, within DVU1975 at 2050.333 kb on - strand, within DVU1975 at 2050.343 kb on - strand, within DVU1975 at 2050.598 kb on - strand at 2050.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM remove 2,048,356 + DVU1974 0.47 +0.8 2,048,395 - DVU1974 0.50 -0.4 2,048,518 + DVU1974 0.61 -0.1 2,048,615 - DVU1974 0.70 -0.4 2,048,632 + DVU1974 0.72 +0.8 2,048,642 + DVU1974 0.73 -0.1 2,048,645 - DVU1974 0.73 -1.2 2,048,647 - DVU1974 0.73 -0.4 2,048,766 + DVU1974 0.84 -1.3 2,048,774 - DVU1974 0.85 +1.0 2,048,845 + -0.0 2,048,903 + -0.2 2,048,999 - -0.3 2,049,021 - +0.2 2,049,053 - +0.3 2,049,072 + +0.0 2,049,080 - +0.0 2,049,105 - -0.3 2,049,228 - DVU1975 0.12 +0.1 2,049,323 - DVU1975 0.18 +0.1 2,049,331 + DVU1975 0.18 -0.4 2,049,465 - DVU1975 0.26 -0.3 2,049,733 - DVU1975 0.41 -0.2 2,049,842 + DVU1975 0.47 -0.3 2,049,879 - DVU1975 0.49 +0.8 2,049,967 - DVU1975 0.54 +1.9 2,050,019 - DVU1975 0.57 +2.1 2,050,019 - DVU1975 0.57 -1.6 2,050,019 - DVU1975 0.57 +0.1 2,050,026 + DVU1975 0.58 +0.3 2,050,031 - DVU1975 0.58 +0.6 2,050,034 - DVU1975 0.58 +1.1 2,050,039 - DVU1975 0.59 +0.6 2,050,045 - DVU1975 0.59 -0.2 2,050,171 - DVU1975 0.66 +0.5 2,050,296 + DVU1975 0.73 +0.1 2,050,333 - DVU1975 0.75 -0.4 2,050,343 - DVU1975 0.76 -0.3 2,050,598 - -0.3 2,050,853 - +0.4
Or see this region's nucleotide sequence