Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1975

Experiment: MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1974 and DVU1975 are separated by 71 nucleotidesDVU1975 and groEL are separated by 194 nucleotides DVU1974: DVU1974 - pyridine nucleotide-disulfide oxidoreductase (TIGR), at 2,047,840 to 2,048,943 DVU1974 DVU1975: DVU1975 - methyl-accepting chemotaxis protein (TIGR), at 2,049,015 to 2,050,763 DVU1975 DVU1976: groEL - chaperonin, 60 kDa (TIGR), at 2,050,958 to 2,052,601 groEL Position (kb) 2049 2050 2051Strain fitness (log2 ratio) -1 0 1 2at 2048.356 kb on + strand, within DVU1974at 2048.395 kb on - strand, within DVU1974at 2048.518 kb on + strand, within DVU1974at 2048.615 kb on - strand, within DVU1974at 2048.632 kb on + strand, within DVU1974at 2048.642 kb on + strand, within DVU1974at 2048.645 kb on - strand, within DVU1974at 2048.647 kb on - strand, within DVU1974at 2048.766 kb on + strand, within DVU1974at 2048.774 kb on - strand, within DVU1974at 2048.845 kb on + strandat 2048.903 kb on + strandat 2048.999 kb on - strandat 2049.021 kb on - strandat 2049.053 kb on - strandat 2049.072 kb on + strandat 2049.080 kb on - strandat 2049.105 kb on - strandat 2049.228 kb on - strand, within DVU1975at 2049.323 kb on - strand, within DVU1975at 2049.331 kb on + strand, within DVU1975at 2049.465 kb on - strand, within DVU1975at 2049.733 kb on - strand, within DVU1975at 2049.842 kb on + strand, within DVU1975at 2049.879 kb on - strand, within DVU1975at 2049.967 kb on - strand, within DVU1975at 2050.019 kb on - strand, within DVU1975at 2050.019 kb on - strand, within DVU1975at 2050.019 kb on - strand, within DVU1975at 2050.026 kb on + strand, within DVU1975at 2050.031 kb on - strand, within DVU1975at 2050.034 kb on - strand, within DVU1975at 2050.039 kb on - strand, within DVU1975at 2050.045 kb on - strand, within DVU1975at 2050.171 kb on - strand, within DVU1975at 2050.296 kb on + strand, within DVU1975at 2050.333 kb on - strand, within DVU1975at 2050.343 kb on - strand, within DVU1975at 2050.598 kb on - strandat 2050.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM
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2,048,356 + DVU1974 0.47 +0.8
2,048,395 - DVU1974 0.50 -0.4
2,048,518 + DVU1974 0.61 -0.1
2,048,615 - DVU1974 0.70 -0.4
2,048,632 + DVU1974 0.72 +0.8
2,048,642 + DVU1974 0.73 -0.1
2,048,645 - DVU1974 0.73 -1.2
2,048,647 - DVU1974 0.73 -0.4
2,048,766 + DVU1974 0.84 -1.3
2,048,774 - DVU1974 0.85 +1.0
2,048,845 + -0.0
2,048,903 + -0.2
2,048,999 - -0.3
2,049,021 - +0.2
2,049,053 - +0.3
2,049,072 + +0.0
2,049,080 - +0.0
2,049,105 - -0.3
2,049,228 - DVU1975 0.12 +0.1
2,049,323 - DVU1975 0.18 +0.1
2,049,331 + DVU1975 0.18 -0.4
2,049,465 - DVU1975 0.26 -0.3
2,049,733 - DVU1975 0.41 -0.2
2,049,842 + DVU1975 0.47 -0.3
2,049,879 - DVU1975 0.49 +0.8
2,049,967 - DVU1975 0.54 +1.9
2,050,019 - DVU1975 0.57 +2.1
2,050,019 - DVU1975 0.57 -1.6
2,050,019 - DVU1975 0.57 +0.1
2,050,026 + DVU1975 0.58 +0.3
2,050,031 - DVU1975 0.58 +0.6
2,050,034 - DVU1975 0.58 +1.1
2,050,039 - DVU1975 0.59 +0.6
2,050,045 - DVU1975 0.59 -0.2
2,050,171 - DVU1975 0.66 +0.5
2,050,296 + DVU1975 0.73 +0.1
2,050,333 - DVU1975 0.75 -0.4
2,050,343 - DVU1975 0.76 -0.3
2,050,598 - -0.3
2,050,853 - +0.4

Or see this region's nucleotide sequence