Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0975

Experiment: MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0973 and DVU0974 are separated by 98 nucleotidesDVU0974 and DVU0975 are separated by 32 nucleotidesDVU0975 and DVU0976 are separated by 142 nucleotides DVU0973: DVU0973 - 4-hydroxybenzoate octaprenyltransferase, putative (TIGR), at 1,069,632 to 1,070,501 DVU0973 DVU0974: DVU0974 - hypothetical protein (TIGR), at 1,070,600 to 1,070,938 DVU0974 DVU0975: DVU0975 - conserved hypothetical protein (TIGR), at 1,070,971 to 1,071,531 DVU0975 DVU0976: DVU0976 - response regulator (TIGR), at 1,071,674 to 1,072,837 DVU0976 Position (kb) 1070 1071 1072Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1070.405 kb on + strand, within DVU0973at 1070.552 kb on + strandat 1070.607 kb on + strandat 1070.615 kb on - strandat 1070.655 kb on - strand, within DVU0974at 1070.896 kb on + strand, within DVU0974at 1070.897 kb on - strand, within DVU0974at 1071.027 kb on - strand, within DVU0975at 1071.066 kb on - strand, within DVU0975at 1071.122 kb on + strand, within DVU0975at 1071.122 kb on + strand, within DVU0975at 1071.414 kb on + strand, within DVU0975at 1071.540 kb on - strandat 1071.611 kb on + strandat 1071.619 kb on - strandat 1071.685 kb on - strandat 1071.755 kb on + strandat 1071.790 kb on + strandat 1071.810 kb on + strand, within DVU0976at 1071.818 kb on - strand, within DVU0976at 1071.823 kb on - strand, within DVU0976at 1071.866 kb on - strand, within DVU0976at 1071.894 kb on + strand, within DVU0976at 1071.981 kb on - strand, within DVU0976at 1072.017 kb on + strand, within DVU0976at 1072.025 kb on - strand, within DVU0976at 1072.109 kb on + strand, within DVU0976at 1072.117 kb on - strand, within DVU0976at 1072.117 kb on - strand, within DVU0976at 1072.289 kb on + strand, within DVU0976at 1072.331 kb on - strand, within DVU0976at 1072.431 kb on + strand, within DVU0976at 1072.456 kb on + strand, within DVU0976at 1072.456 kb on - strand, within DVU0976at 1072.464 kb on + strand, within DVU0976at 1072.485 kb on + strand, within DVU0976at 1072.485 kb on + strand, within DVU0976

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.125mg/mL + Zinc Sulfate 0.1mM
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1,070,405 + DVU0973 0.89 -2.4
1,070,552 + -0.2
1,070,607 + -0.8
1,070,615 - +0.2
1,070,655 - DVU0974 0.16 -0.2
1,070,896 + DVU0974 0.87 -0.1
1,070,897 - DVU0974 0.88 +0.0
1,071,027 - DVU0975 0.10 +1.1
1,071,066 - DVU0975 0.17 +0.1
1,071,122 + DVU0975 0.27 +1.1
1,071,122 + DVU0975 0.27 +2.8
1,071,414 + DVU0975 0.79 -0.1
1,071,540 - -0.1
1,071,611 + +0.8
1,071,619 - -0.2
1,071,685 - -0.1
1,071,755 + +0.2
1,071,790 + -1.5
1,071,810 + DVU0976 0.12 +0.2
1,071,818 - DVU0976 0.12 +1.2
1,071,823 - DVU0976 0.13 +0.0
1,071,866 - DVU0976 0.16 +0.2
1,071,894 + DVU0976 0.19 +0.2
1,071,981 - DVU0976 0.26 -0.3
1,072,017 + DVU0976 0.29 -0.1
1,072,025 - DVU0976 0.30 +0.1
1,072,109 + DVU0976 0.37 +0.2
1,072,117 - DVU0976 0.38 +0.3
1,072,117 - DVU0976 0.38 +0.0
1,072,289 + DVU0976 0.53 -0.1
1,072,331 - DVU0976 0.56 +0.3
1,072,431 + DVU0976 0.65 +0.2
1,072,456 + DVU0976 0.67 -1.0
1,072,456 - DVU0976 0.67 -0.2
1,072,464 + DVU0976 0.68 +0.4
1,072,485 + DVU0976 0.70 -0.0
1,072,485 + DVU0976 0.70 +0.1

Or see this region's nucleotide sequence