Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0901

Experiment: Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0899 and gifA are separated by 144 nucleotidesgifA and Synpcc7942_0901 are separated by 136 nucleotidesSynpcc7942_0901 and Synpcc7942_0902 are separated by 58 nucleotides Synpcc7942_0899: Synpcc7942_0899 - hypothetical protein, at 908,498 to 909,295 _0899 Synpcc7942_0900: gifA - hypothetical protein, at 909,440 to 909,643 gifA Synpcc7942_0901: Synpcc7942_0901 - Haloalkane dehalogenase, at 909,780 to 910,676 _0901 Synpcc7942_0902: Synpcc7942_0902 - hypothetical protein, at 910,735 to 911,694 _0902 Position (kb) 909 910 911Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 908.846 kb on - strand, within Synpcc7942_0899at 908.860 kb on + strand, within Synpcc7942_0899at 908.865 kb on + strand, within Synpcc7942_0899at 908.868 kb on - strand, within Synpcc7942_0899at 908.876 kb on + strand, within Synpcc7942_0899at 908.922 kb on + strand, within Synpcc7942_0899at 908.922 kb on + strand, within Synpcc7942_0899at 908.922 kb on + strand, within Synpcc7942_0899at 908.938 kb on - strand, within Synpcc7942_0899at 908.955 kb on - strand, within Synpcc7942_0899at 909.117 kb on + strand, within Synpcc7942_0899at 909.117 kb on + strand, within Synpcc7942_0899at 909.120 kb on - strand, within Synpcc7942_0899at 909.122 kb on + strand, within Synpcc7942_0899at 909.122 kb on + strand, within Synpcc7942_0899at 909.125 kb on - strand, within Synpcc7942_0899at 909.125 kb on - strand, within Synpcc7942_0899at 909.150 kb on + strand, within Synpcc7942_0899at 909.165 kb on - strand, within Synpcc7942_0899at 909.179 kb on - strand, within Synpcc7942_0899at 909.186 kb on - strand, within Synpcc7942_0899at 909.213 kb on + strand, within Synpcc7942_0899at 909.229 kb on + strandat 909.254 kb on + strandat 909.254 kb on + strandat 909.254 kb on + strandat 909.269 kb on + strandat 909.403 kb on + strandat 909.411 kb on - strandat 909.419 kb on + strandat 909.439 kb on - strandat 909.443 kb on + strandat 909.451 kb on - strandat 909.461 kb on - strand, within gifAat 909.464 kb on + strand, within gifAat 909.464 kb on + strand, within gifAat 909.472 kb on - strand, within gifAat 909.500 kb on - strand, within gifAat 909.505 kb on - strand, within gifAat 909.505 kb on - strand, within gifAat 909.505 kb on - strand, within gifAat 909.520 kb on - strand, within gifAat 909.540 kb on + strand, within gifAat 909.614 kb on - strand, within gifAat 909.628 kb on + strandat 909.638 kb on + strandat 909.777 kb on + strandat 909.782 kb on + strandat 909.821 kb on + strandat 909.824 kb on - strandat 909.879 kb on + strand, within Synpcc7942_0901at 909.883 kb on + strand, within Synpcc7942_0901at 909.893 kb on + strand, within Synpcc7942_0901at 909.914 kb on - strand, within Synpcc7942_0901at 909.939 kb on + strand, within Synpcc7942_0901at 909.947 kb on - strand, within Synpcc7942_0901at 909.947 kb on - strand, within Synpcc7942_0901at 909.953 kb on - strand, within Synpcc7942_0901at 909.962 kb on + strand, within Synpcc7942_0901at 909.992 kb on - strand, within Synpcc7942_0901at 910.002 kb on + strand, within Synpcc7942_0901at 910.012 kb on + strand, within Synpcc7942_0901at 910.020 kb on - strand, within Synpcc7942_0901at 910.023 kb on + strand, within Synpcc7942_0901at 910.036 kb on + strand, within Synpcc7942_0901at 910.036 kb on + strand, within Synpcc7942_0901at 910.044 kb on - strand, within Synpcc7942_0901at 910.044 kb on - strand, within Synpcc7942_0901at 910.054 kb on - strand, within Synpcc7942_0901at 910.063 kb on + strand, within Synpcc7942_0901at 910.073 kb on - strand, within Synpcc7942_0901at 910.099 kb on + strand, within Synpcc7942_0901at 910.104 kb on + strand, within Synpcc7942_0901at 910.112 kb on - strand, within Synpcc7942_0901at 910.112 kb on - strand, within Synpcc7942_0901at 910.118 kb on - strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.140 kb on + strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.171 kb on + strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.181 kb on - strand, within Synpcc7942_0901at 910.183 kb on - strand, within Synpcc7942_0901at 910.208 kb on + strand, within Synpcc7942_0901at 910.208 kb on + strand, within Synpcc7942_0901at 910.211 kb on - strand, within Synpcc7942_0901at 910.211 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.219 kb on - strand, within Synpcc7942_0901at 910.220 kb on + strand, within Synpcc7942_0901at 910.228 kb on - strand, within Synpcc7942_0901at 910.242 kb on + strand, within Synpcc7942_0901at 910.268 kb on + strand, within Synpcc7942_0901at 910.316 kb on - strand, within Synpcc7942_0901at 910.342 kb on + strand, within Synpcc7942_0901at 910.342 kb on + strand, within Synpcc7942_0901at 910.414 kb on + strand, within Synpcc7942_0901at 910.468 kb on + strand, within Synpcc7942_0901at 910.489 kb on - strand, within Synpcc7942_0901at 910.526 kb on + strand, within Synpcc7942_0901at 910.532 kb on + strand, within Synpcc7942_0901at 910.532 kb on + strand, within Synpcc7942_0901at 910.546 kb on - strand, within Synpcc7942_0901at 910.700 kb on + strandat 910.702 kb on + strandat 910.708 kb on - strandat 910.708 kb on - strandat 910.808 kb on - strandat 910.810 kb on + strandat 910.849 kb on - strand, within Synpcc7942_0902at 910.931 kb on + strand, within Synpcc7942_0902at 910.990 kb on - strand, within Synpcc7942_0902at 911.010 kb on + strand, within Synpcc7942_0902at 911.025 kb on - strand, within Synpcc7942_0902at 911.037 kb on + strand, within Synpcc7942_0902at 911.184 kb on - strand, within Synpcc7942_0902at 911.209 kb on - strand, within Synpcc7942_0902at 911.233 kb on + strand, within Synpcc7942_0902at 911.243 kb on + strand, within Synpcc7942_0902at 911.278 kb on - strand, within Synpcc7942_0902at 911.297 kb on + strand, within Synpcc7942_0902at 911.312 kb on - strand, within Synpcc7942_0902at 911.450 kb on + strand, within Synpcc7942_0902at 911.458 kb on - strand, within Synpcc7942_0902at 911.473 kb on + strand, within Synpcc7942_0902at 911.483 kb on + strand, within Synpcc7942_0902at 911.483 kb on + strand, within Synpcc7942_0902at 911.484 kb on + strandat 911.490 kb on - strand, within Synpcc7942_0902at 911.490 kb on - strand, within Synpcc7942_0902at 911.513 kb on - strand, within Synpcc7942_0902at 911.513 kb on - strand, within Synpcc7942_0902at 911.539 kb on - strand, within Synpcc7942_0902at 911.551 kb on + strand, within Synpcc7942_0902at 911.552 kb on + strand, within Synpcc7942_0902at 911.584 kb on + strand, within Synpcc7942_0902at 911.619 kb on + strandat 911.619 kb on + strandat 911.642 kb on + strandat 911.645 kb on - strandat 911.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol%
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908,846 - Synpcc7942_0899 0.44 -1.5
908,860 + Synpcc7942_0899 0.45 +1.3
908,865 + Synpcc7942_0899 0.46 +0.8
908,868 - Synpcc7942_0899 0.46 +0.3
908,876 + Synpcc7942_0899 0.47 -0.2
908,922 + Synpcc7942_0899 0.53 +2.2
908,922 + Synpcc7942_0899 0.53 -0.6
908,922 + Synpcc7942_0899 0.53 -0.7
908,938 - Synpcc7942_0899 0.55 +0.8
908,955 - Synpcc7942_0899 0.57 -0.6
909,117 + Synpcc7942_0899 0.78 +2.2
909,117 + Synpcc7942_0899 0.78 +1.8
909,120 - Synpcc7942_0899 0.78 +0.1
909,122 + Synpcc7942_0899 0.78 +0.5
909,122 + Synpcc7942_0899 0.78 -0.2
909,125 - Synpcc7942_0899 0.79 +1.2
909,125 - Synpcc7942_0899 0.79 +1.0
909,150 + Synpcc7942_0899 0.82 -0.6
909,165 - Synpcc7942_0899 0.84 -1.5
909,179 - Synpcc7942_0899 0.85 -2.0
909,186 - Synpcc7942_0899 0.86 +0.3
909,213 + Synpcc7942_0899 0.90 -0.6
909,229 + -1.2
909,254 + +1.4
909,254 + -3.6
909,254 + +1.7
909,269 + +0.2
909,403 + -0.2
909,411 - +0.9
909,419 + +0.7
909,439 - -0.8
909,443 + -0.6
909,451 - -1.0
909,461 - gifA Synpcc7942_0900 0.10 +0.3
909,464 + gifA Synpcc7942_0900 0.12 +0.7
909,464 + gifA Synpcc7942_0900 0.12 -1.0
909,472 - gifA Synpcc7942_0900 0.16 -0.3
909,500 - gifA Synpcc7942_0900 0.29 -0.6
909,505 - gifA Synpcc7942_0900 0.32 +0.8
909,505 - gifA Synpcc7942_0900 0.32 -0.1
909,505 - gifA Synpcc7942_0900 0.32 -3.1
909,520 - gifA Synpcc7942_0900 0.39 -0.6
909,540 + gifA Synpcc7942_0900 0.49 -2.2
909,614 - gifA Synpcc7942_0900 0.85 +0.8
909,628 + -1.0
909,638 + +1.6
909,777 + +0.7
909,782 + +0.4
909,821 + -0.7
909,824 - -0.2
909,879 + Synpcc7942_0901 0.11 -2.0
909,883 + Synpcc7942_0901 0.11 -0.8
909,893 + Synpcc7942_0901 0.13 -1.7
909,914 - Synpcc7942_0901 0.15 -0.3
909,939 + Synpcc7942_0901 0.18 -0.6
909,947 - Synpcc7942_0901 0.19 -0.0
909,947 - Synpcc7942_0901 0.19 +0.4
909,953 - Synpcc7942_0901 0.19 -1.4
909,962 + Synpcc7942_0901 0.20 +0.4
909,992 - Synpcc7942_0901 0.24 +0.0
910,002 + Synpcc7942_0901 0.25 -1.2
910,012 + Synpcc7942_0901 0.26 -0.2
910,020 - Synpcc7942_0901 0.27 +0.1
910,023 + Synpcc7942_0901 0.27 -1.5
910,036 + Synpcc7942_0901 0.29 -1.0
910,036 + Synpcc7942_0901 0.29 -1.2
910,044 - Synpcc7942_0901 0.29 +1.7
910,044 - Synpcc7942_0901 0.29 -1.1
910,054 - Synpcc7942_0901 0.31 -0.7
910,063 + Synpcc7942_0901 0.32 -0.5
910,073 - Synpcc7942_0901 0.33 +0.1
910,099 + Synpcc7942_0901 0.36 +0.8
910,104 + Synpcc7942_0901 0.36 +1.1
910,112 - Synpcc7942_0901 0.37 +0.4
910,112 - Synpcc7942_0901 0.37 +0.6
910,118 - Synpcc7942_0901 0.38 +1.5
910,134 + Synpcc7942_0901 0.39 -0.2
910,134 + Synpcc7942_0901 0.39 -0.9
910,134 + Synpcc7942_0901 0.39 +0.8
910,140 + Synpcc7942_0901 0.40 -0.0
910,142 - Synpcc7942_0901 0.40 +0.8
910,142 - Synpcc7942_0901 0.40 -2.2
910,142 - Synpcc7942_0901 0.40 -2.7
910,163 + Synpcc7942_0901 0.43 +0.1
910,163 + Synpcc7942_0901 0.43 +0.5
910,163 + Synpcc7942_0901 0.43 -0.4
910,163 + Synpcc7942_0901 0.43 +1.3
910,163 + Synpcc7942_0901 0.43 -1.2
910,171 + Synpcc7942_0901 0.44 +0.3
910,171 - Synpcc7942_0901 0.44 -0.5
910,171 - Synpcc7942_0901 0.44 -2.2
910,171 - Synpcc7942_0901 0.44 -0.9
910,171 - Synpcc7942_0901 0.44 -0.2
910,171 - Synpcc7942_0901 0.44 +0.6
910,171 - Synpcc7942_0901 0.44 +0.5
910,181 - Synpcc7942_0901 0.45 -2.0
910,183 - Synpcc7942_0901 0.45 -0.2
910,208 + Synpcc7942_0901 0.48 +0.5
910,208 + Synpcc7942_0901 0.48 +0.5
910,211 - Synpcc7942_0901 0.48 +0.1
910,211 - Synpcc7942_0901 0.48 -0.7
910,216 - Synpcc7942_0901 0.49 +1.0
910,216 - Synpcc7942_0901 0.49 +0.3
910,216 - Synpcc7942_0901 0.49 +1.3
910,219 - Synpcc7942_0901 0.49 +0.6
910,220 + Synpcc7942_0901 0.49 +0.1
910,228 - Synpcc7942_0901 0.50 -0.8
910,242 + Synpcc7942_0901 0.52 -0.1
910,268 + Synpcc7942_0901 0.54 -2.2
910,316 - Synpcc7942_0901 0.60 +0.8
910,342 + Synpcc7942_0901 0.63 -0.7
910,342 + Synpcc7942_0901 0.63 +1.7
910,414 + Synpcc7942_0901 0.71 -0.2
910,468 + Synpcc7942_0901 0.77 -1.2
910,489 - Synpcc7942_0901 0.79 +0.8
910,526 + Synpcc7942_0901 0.83 -1.7
910,532 + Synpcc7942_0901 0.84 -0.7
910,532 + Synpcc7942_0901 0.84 -1.5
910,546 - Synpcc7942_0901 0.85 -0.8
910,700 + +0.8
910,702 + -0.2
910,708 - +0.7
910,708 - +1.2
910,808 - -0.2
910,810 + +0.8
910,849 - Synpcc7942_0902 0.12 -0.2
910,931 + Synpcc7942_0902 0.20 +0.6
910,990 - Synpcc7942_0902 0.27 -0.5
911,010 + Synpcc7942_0902 0.29 -1.2
911,025 - Synpcc7942_0902 0.30 -0.8
911,037 + Synpcc7942_0902 0.31 +0.6
911,184 - Synpcc7942_0902 0.47 -2.0
911,209 - Synpcc7942_0902 0.49 +1.5
911,233 + Synpcc7942_0902 0.52 -1.5
911,243 + Synpcc7942_0902 0.53 +0.3
911,278 - Synpcc7942_0902 0.57 +0.6
911,297 + Synpcc7942_0902 0.59 -1.2
911,312 - Synpcc7942_0902 0.60 +0.5
911,450 + Synpcc7942_0902 0.74 +1.8
911,458 - Synpcc7942_0902 0.75 +0.2
911,473 + Synpcc7942_0902 0.77 -0.6
911,483 + Synpcc7942_0902 0.78 +0.1
911,483 + Synpcc7942_0902 0.78 -1.7
911,484 + +0.4
911,490 - Synpcc7942_0902 0.79 -0.7
911,490 - Synpcc7942_0902 0.79 +0.3
911,513 - Synpcc7942_0902 0.81 -0.2
911,513 - Synpcc7942_0902 0.81 -0.5
911,539 - Synpcc7942_0902 0.84 +0.0
911,551 + Synpcc7942_0902 0.85 -0.4
911,552 + Synpcc7942_0902 0.85 +0.3
911,584 + Synpcc7942_0902 0.88 -0.7
911,619 + -0.4
911,619 + -0.2
911,642 + +0.2
911,645 - +0.4
911,670 - +2.3

Or see this region's nucleotide sequence