Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemL and Synpcc7942_0646 are separated by 6 nucleotides Synpcc7942_0646 and Synpcc7942_0647 are separated by 203 nucleotides Synpcc7942_0647 and Synpcc7942_0648 are separated by 104 nucleotides
Synpcc7942_0645: hemL - glutamate-1-semialdehyde aminotransferase, at 639,397 to 640,758
hemL
Synpcc7942_0646: Synpcc7942_0646 - hypothetical protein, at 640,765 to 640,992
_0646
Synpcc7942_0647: Synpcc7942_0647 - hypothetical protein, at 641,196 to 641,738
_0647
Synpcc7942_0648: Synpcc7942_0648 - hypothetical protein, at 641,843 to 642,694
_0648
Position (kb) 641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 640.828 kb on + strand, within Synpcc7942_0646 at 640.905 kb on - strand, within Synpcc7942_0646 at 640.931 kb on - strand, within Synpcc7942_0646 at 640.956 kb on + strand, within Synpcc7942_0646 at 640.986 kb on + strand at 641.015 kb on + strand at 641.025 kb on + strand at 641.028 kb on - strand at 641.051 kb on + strand at 641.053 kb on + strand at 641.059 kb on - strand at 641.059 kb on - strand at 641.069 kb on + strand at 641.086 kb on + strand at 641.120 kb on + strand at 641.120 kb on + strand at 641.123 kb on - strand at 641.125 kb on + strand at 641.166 kb on + strand at 641.335 kb on + strand, within Synpcc7942_0647 at 641.343 kb on - strand, within Synpcc7942_0647 at 641.371 kb on - strand, within Synpcc7942_0647 at 641.391 kb on - strand, within Synpcc7942_0647 at 641.425 kb on + strand, within Synpcc7942_0647 at 641.455 kb on - strand, within Synpcc7942_0647 at 641.535 kb on - strand, within Synpcc7942_0647 at 641.549 kb on - strand, within Synpcc7942_0647 at 641.553 kb on + strand, within Synpcc7942_0647 at 641.554 kb on - strand, within Synpcc7942_0647 at 641.649 kb on + strand, within Synpcc7942_0647 at 641.699 kb on - strand at 641.699 kb on - strand at 641.728 kb on - strand at 641.752 kb on + strand at 641.774 kb on + strand at 641.774 kb on + strand at 641.774 kb on + strand at 641.774 kb on + strand at 641.782 kb on - strand at 641.782 kb on - strand at 641.807 kb on - strand at 642.119 kb on - strand, within Synpcc7942_0648 at 642.248 kb on + strand, within Synpcc7942_0648 at 642.350 kb on + strand, within Synpcc7942_0648 at 642.584 kb on - strand, within Synpcc7942_0648
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 640,828 + Synpcc7942_0646 0.28 +0.4 640,905 - Synpcc7942_0646 0.61 -0.0 640,931 - Synpcc7942_0646 0.73 -2.2 640,956 + Synpcc7942_0646 0.84 +0.6 640,986 + +0.3 641,015 + +1.6 641,025 + +0.3 641,028 - -1.0 641,051 + -0.7 641,053 + +0.8 641,059 - +0.5 641,059 - +1.2 641,069 + -0.7 641,086 + +0.2 641,120 + +0.8 641,120 + +0.8 641,123 - -0.2 641,125 + -0.7 641,166 + -0.8 641,335 + Synpcc7942_0647 0.26 -0.5 641,343 - Synpcc7942_0647 0.27 -1.3 641,371 - Synpcc7942_0647 0.32 +0.3 641,391 - Synpcc7942_0647 0.36 -0.4 641,425 + Synpcc7942_0647 0.42 -0.4 641,455 - Synpcc7942_0647 0.48 -1.5 641,535 - Synpcc7942_0647 0.62 -2.2 641,549 - Synpcc7942_0647 0.65 -1.1 641,553 + Synpcc7942_0647 0.66 -0.2 641,554 - Synpcc7942_0647 0.66 -1.4 641,649 + Synpcc7942_0647 0.83 -0.6 641,699 - -1.5 641,699 - +0.6 641,728 - -1.4 641,752 + +0.8 641,774 + +1.1 641,774 + -2.7 641,774 + -1.2 641,774 + -0.9 641,782 - +0.2 641,782 - +1.3 641,807 - -0.0 642,119 - Synpcc7942_0648 0.32 -1.6 642,248 + Synpcc7942_0648 0.48 -0.2 642,350 + Synpcc7942_0648 0.60 +0.3 642,584 - Synpcc7942_0648 0.87 +0.8
Or see this region's nucleotide sequence