Experiment: Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hoxF and cinA are separated by 9 nucleotides cinA and Synpcc7942_0281 are separated by 9 nucleotides
Synpcc7942_0279: hoxF - NADH dehydrogenase (quinone), at 274,154 to 275,758
hoxF
Synpcc7942_0280: cinA - competence damage-inducible protein A, at 275,768 to 277,033
cinA
Synpcc7942_0281: Synpcc7942_0281 - probable glycosyltransferase, at 277,043 to 278,116
_0281
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 274.769 kb on - strand, within hoxF at 274.769 kb on - strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.778 kb on + strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.786 kb on - strand, within hoxF at 274.791 kb on + strand, within hoxF at 274.794 kb on + strand, within hoxF at 274.799 kb on - strand, within hoxF at 274.802 kb on + strand, within hoxF at 274.839 kb on + strand, within hoxF at 274.898 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.946 kb on + strand, within hoxF at 274.954 kb on - strand, within hoxF at 274.987 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.065 kb on - strand, within hoxF at 275.078 kb on - strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.103 kb on + strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.111 kb on - strand, within hoxF at 275.113 kb on + strand, within hoxF at 275.139 kb on + strand, within hoxF at 275.150 kb on + strand, within hoxF at 275.226 kb on + strand, within hoxF at 275.314 kb on - strand, within hoxF at 275.350 kb on - strand, within hoxF at 275.356 kb on + strand, within hoxF at 275.381 kb on - strand, within hoxF at 275.382 kb on - strand, within hoxF at 275.405 kb on - strand, within hoxF at 275.407 kb on + strand, within hoxF at 275.441 kb on - strand, within hoxF at 275.455 kb on - strand, within hoxF at 275.457 kb on + strand, within hoxF at 275.457 kb on + strand, within hoxF at 275.501 kb on + strand, within hoxF at 275.543 kb on + strand, within hoxF at 275.550 kb on + strand, within hoxF at 275.551 kb on - strand, within hoxF at 275.569 kb on + strand, within hoxF at 275.569 kb on - strand, within hoxF at 275.579 kb on + strand, within hoxF at 275.579 kb on + strand, within hoxF at 275.587 kb on - strand, within hoxF at 275.598 kb on + strand at 275.598 kb on + strand at 275.606 kb on - strand at 275.606 kb on - strand at 275.609 kb on + strand at 275.616 kb on - strand at 275.660 kb on - strand at 275.661 kb on + strand at 275.680 kb on + strand at 275.682 kb on + strand at 275.692 kb on + strand at 275.710 kb on - strand at 275.715 kb on + strand at 275.735 kb on - strand at 275.751 kb on + strand at 275.759 kb on - strand at 275.789 kb on + strand at 275.856 kb on + strand at 275.864 kb on - strand at 275.864 kb on - strand at 275.864 kb on - strand at 275.866 kb on + strand at 275.871 kb on + strand at 275.893 kb on - strand at 275.912 kb on - strand, within cinA at 275.912 kb on - strand, within cinA at 275.973 kb on + strand, within cinA at 275.993 kb on + strand, within cinA at 276.003 kb on - strand, within cinA at 276.016 kb on + strand, within cinA at 276.016 kb on + strand, within cinA at 276.020 kb on + strand, within cinA at 276.024 kb on - strand, within cinA at 276.025 kb on + strand, within cinA at 276.069 kb on + strand, within cinA at 276.095 kb on + strand, within cinA at 276.103 kb on - strand, within cinA at 276.116 kb on + strand, within cinA at 276.145 kb on - strand, within cinA at 276.182 kb on + strand, within cinA at 276.220 kb on + strand, within cinA at 276.228 kb on - strand, within cinA at 276.251 kb on + strand, within cinA at 276.271 kb on - strand, within cinA at 276.292 kb on + strand, within cinA at 276.292 kb on + strand, within cinA at 276.300 kb on - strand, within cinA at 276.300 kb on - strand, within cinA at 276.316 kb on + strand, within cinA at 276.319 kb on - strand, within cinA at 276.338 kb on - strand, within cinA at 276.348 kb on + strand, within cinA at 276.376 kb on + strand, within cinA at 276.386 kb on + strand, within cinA at 276.409 kb on + strand, within cinA at 276.417 kb on - strand, within cinA at 276.514 kb on + strand, within cinA at 276.521 kb on - strand, within cinA at 276.521 kb on - strand, within cinA at 276.531 kb on - strand, within cinA at 276.572 kb on + strand, within cinA at 276.589 kb on - strand, within cinA at 276.638 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.695 kb on - strand, within cinA at 276.750 kb on + strand, within cinA at 276.751 kb on - strand, within cinA at 276.772 kb on + strand, within cinA at 276.808 kb on + strand, within cinA at 276.817 kb on + strand, within cinA at 276.822 kb on + strand, within cinA at 276.835 kb on + strand, within cinA at 276.843 kb on - strand, within cinA at 276.867 kb on + strand, within cinA at 276.875 kb on - strand, within cinA at 276.875 kb on - strand, within cinA at 276.909 kb on - strand at 276.929 kb on + strand at 276.942 kb on + strand at 276.947 kb on + strand at 276.962 kb on + strand at 276.972 kb on + strand at 276.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 5 vol% remove 274,769 - hoxF Synpcc7942_0279 0.38 +1.5 274,769 - hoxF Synpcc7942_0279 0.38 +1.9 274,778 + hoxF Synpcc7942_0279 0.39 -1.1 274,778 + hoxF Synpcc7942_0279 0.39 -0.2 274,778 + hoxF Synpcc7942_0279 0.39 -0.8 274,778 + hoxF Synpcc7942_0279 0.39 -0.4 274,778 + hoxF Synpcc7942_0279 0.39 +0.7 274,786 - hoxF Synpcc7942_0279 0.39 -1.6 274,786 - hoxF Synpcc7942_0279 0.39 +1.1 274,786 - hoxF Synpcc7942_0279 0.39 -1.1 274,786 - hoxF Synpcc7942_0279 0.39 +0.8 274,791 + hoxF Synpcc7942_0279 0.40 +0.1 274,794 + hoxF Synpcc7942_0279 0.40 +1.1 274,799 - hoxF Synpcc7942_0279 0.40 -1.1 274,802 + hoxF Synpcc7942_0279 0.40 +0.9 274,839 + hoxF Synpcc7942_0279 0.43 -2.4 274,898 + hoxF Synpcc7942_0279 0.46 +0.8 274,946 + hoxF Synpcc7942_0279 0.49 -1.1 274,946 + hoxF Synpcc7942_0279 0.49 -0.1 274,946 + hoxF Synpcc7942_0279 0.49 +0.2 274,946 + hoxF Synpcc7942_0279 0.49 -0.2 274,954 - hoxF Synpcc7942_0279 0.50 -0.1 274,987 - hoxF Synpcc7942_0279 0.52 +0.3 275,065 - hoxF Synpcc7942_0279 0.57 +1.1 275,065 - hoxF Synpcc7942_0279 0.57 -0.2 275,078 - hoxF Synpcc7942_0279 0.58 -0.1 275,103 + hoxF Synpcc7942_0279 0.59 +0.4 275,103 + hoxF Synpcc7942_0279 0.59 +0.2 275,103 + hoxF Synpcc7942_0279 0.59 +2.0 275,111 - hoxF Synpcc7942_0279 0.60 +0.1 275,111 - hoxF Synpcc7942_0279 0.60 -0.1 275,111 - hoxF Synpcc7942_0279 0.60 -0.1 275,113 + hoxF Synpcc7942_0279 0.60 +1.6 275,139 + hoxF Synpcc7942_0279 0.61 +0.4 275,150 + hoxF Synpcc7942_0279 0.62 -0.1 275,226 + hoxF Synpcc7942_0279 0.67 +0.2 275,314 - hoxF Synpcc7942_0279 0.72 +0.9 275,350 - hoxF Synpcc7942_0279 0.75 -0.1 275,356 + hoxF Synpcc7942_0279 0.75 -0.1 275,381 - hoxF Synpcc7942_0279 0.76 +1.1 275,382 - hoxF Synpcc7942_0279 0.77 +1.1 275,405 - hoxF Synpcc7942_0279 0.78 -0.5 275,407 + hoxF Synpcc7942_0279 0.78 +0.7 275,441 - hoxF Synpcc7942_0279 0.80 -0.1 275,455 - hoxF Synpcc7942_0279 0.81 -1.6 275,457 + hoxF Synpcc7942_0279 0.81 -1.6 275,457 + hoxF Synpcc7942_0279 0.81 +0.4 275,501 + hoxF Synpcc7942_0279 0.84 -0.5 275,543 + hoxF Synpcc7942_0279 0.87 +0.7 275,550 + hoxF Synpcc7942_0279 0.87 +0.3 275,551 - hoxF Synpcc7942_0279 0.87 +1.6 275,569 + hoxF Synpcc7942_0279 0.88 -1.0 275,569 - hoxF Synpcc7942_0279 0.88 +0.9 275,579 + hoxF Synpcc7942_0279 0.89 -0.4 275,579 + hoxF Synpcc7942_0279 0.89 +1.5 275,587 - hoxF Synpcc7942_0279 0.89 +2.6 275,598 + +0.7 275,598 + -0.3 275,606 - +1.5 275,606 - +0.9 275,609 + -0.1 275,616 - -2.4 275,660 - +1.3 275,661 + +2.1 275,680 + -0.1 275,682 + +0.5 275,692 + +0.9 275,710 - +0.9 275,715 + +1.7 275,735 - +0.5 275,751 + +0.0 275,759 - -0.3 275,789 + +0.3 275,856 + +0.2 275,864 - -0.5 275,864 - -1.3 275,864 - -1.8 275,866 + +1.0 275,871 + -0.9 275,893 - +2.6 275,912 - cinA Synpcc7942_0280 0.11 +0.1 275,912 - cinA Synpcc7942_0280 0.11 +0.4 275,973 + cinA Synpcc7942_0280 0.16 +0.7 275,993 + cinA Synpcc7942_0280 0.18 +0.7 276,003 - cinA Synpcc7942_0280 0.19 -0.3 276,016 + cinA Synpcc7942_0280 0.20 +0.7 276,016 + cinA Synpcc7942_0280 0.20 +1.4 276,020 + cinA Synpcc7942_0280 0.20 +0.2 276,024 - cinA Synpcc7942_0280 0.20 +2.5 276,025 + cinA Synpcc7942_0280 0.20 -0.5 276,069 + cinA Synpcc7942_0280 0.24 -0.5 276,095 + cinA Synpcc7942_0280 0.26 +0.7 276,103 - cinA Synpcc7942_0280 0.26 +0.4 276,116 + cinA Synpcc7942_0280 0.27 -0.1 276,145 - cinA Synpcc7942_0280 0.30 +1.0 276,182 + cinA Synpcc7942_0280 0.33 -1.8 276,220 + cinA Synpcc7942_0280 0.36 +0.8 276,228 - cinA Synpcc7942_0280 0.36 +1.6 276,251 + cinA Synpcc7942_0280 0.38 -0.1 276,271 - cinA Synpcc7942_0280 0.40 -1.1 276,292 + cinA Synpcc7942_0280 0.41 -0.3 276,292 + cinA Synpcc7942_0280 0.41 +0.4 276,300 - cinA Synpcc7942_0280 0.42 +1.0 276,300 - cinA Synpcc7942_0280 0.42 -0.6 276,316 + cinA Synpcc7942_0280 0.43 -1.1 276,319 - cinA Synpcc7942_0280 0.44 +0.1 276,338 - cinA Synpcc7942_0280 0.45 +0.1 276,348 + cinA Synpcc7942_0280 0.46 -0.4 276,376 + cinA Synpcc7942_0280 0.48 -0.6 276,386 + cinA Synpcc7942_0280 0.49 +1.5 276,409 + cinA Synpcc7942_0280 0.51 +1.0 276,417 - cinA Synpcc7942_0280 0.51 -0.2 276,514 + cinA Synpcc7942_0280 0.59 +0.5 276,521 - cinA Synpcc7942_0280 0.59 +1.2 276,521 - cinA Synpcc7942_0280 0.59 +0.3 276,531 - cinA Synpcc7942_0280 0.60 +0.4 276,572 + cinA Synpcc7942_0280 0.64 -0.4 276,589 - cinA Synpcc7942_0280 0.65 +1.1 276,638 - cinA Synpcc7942_0280 0.69 +0.5 276,695 - cinA Synpcc7942_0280 0.73 -0.4 276,695 - cinA Synpcc7942_0280 0.73 +1.2 276,750 + cinA Synpcc7942_0280 0.78 +3.1 276,751 - cinA Synpcc7942_0280 0.78 -0.5 276,772 + cinA Synpcc7942_0280 0.79 +0.6 276,808 + cinA Synpcc7942_0280 0.82 -0.3 276,817 + cinA Synpcc7942_0280 0.83 +0.9 276,822 + cinA Synpcc7942_0280 0.83 +0.2 276,835 + cinA Synpcc7942_0280 0.84 -0.2 276,843 - cinA Synpcc7942_0280 0.85 +0.9 276,867 + cinA Synpcc7942_0280 0.87 +0.9 276,875 - cinA Synpcc7942_0280 0.87 -0.5 276,875 - cinA Synpcc7942_0280 0.87 +0.4 276,909 - -0.2 276,929 + +0.5 276,942 + -0.1 276,947 + +2.1 276,962 + -0.1 276,972 + -0.6 276,988 - +2.4
Or see this region's nucleotide sequence