Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5405 and Pf1N1B4_5406 are separated by 875 nucleotides Pf1N1B4_5406 and Pf1N1B4_5407 are separated by 379 nucleotides Pf1N1B4_5407 and Pf1N1B4_5408 are separated by 69 nucleotides Pf1N1B4_5408 and Pf1N1B4_5409 are separated by 38 nucleotides
Pf1N1B4_5405 - hypothetical protein, at 140,141 to 141,181
_5405
Pf1N1B4_5406 - hypothetical protein, at 142,057 to 142,173
_5406
Pf1N1B4_5407 - hypothetical protein, at 142,553 to 142,762
_5407
Pf1N1B4_5408 - hypothetical protein, at 142,832 to 143,065
_5408
Pf1N1B4_5409 - hypothetical protein, at 143,104 to 143,562
_5409
Position (kb) 142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 141.074 kb on + strand, within Pf1N1B4_5405 at 141.074 kb on + strand, within Pf1N1B4_5405 at 141.074 kb on + strand, within Pf1N1B4_5405 at 141.074 kb on + strand, within Pf1N1B4_5405 at 141.074 kb on + strand, within Pf1N1B4_5405 at 141.075 kb on - strand, within Pf1N1B4_5405 at 141.088 kb on + strand at 141.088 kb on + strand at 141.089 kb on - strand at 141.089 kb on - strand at 141.092 kb on + strand at 141.092 kb on + strand at 141.092 kb on + strand at 141.092 kb on + strand at 141.092 kb on + strand at 141.092 kb on + strand at 141.093 kb on - strand at 141.093 kb on - strand at 141.093 kb on - strand at 141.093 kb on - strand at 141.093 kb on - strand at 141.093 kb on - strand at 141.093 kb on - strand at 141.131 kb on + strand at 141.134 kb on + strand at 141.156 kb on + strand at 141.156 kb on + strand at 141.156 kb on + strand at 141.157 kb on - strand at 141.157 kb on - strand at 141.160 kb on + strand at 141.160 kb on + strand at 141.160 kb on + strand at 141.160 kb on + strand at 141.160 kb on + strand at 141.160 kb on + strand at 141.160 kb on + strand at 141.161 kb on - strand at 141.296 kb on + strand at 141.297 kb on - strand at 141.297 kb on - strand at 141.350 kb on - strand at 141.350 kb on - strand at 141.350 kb on - strand at 141.363 kb on - strand at 141.415 kb on + strand at 141.415 kb on + strand at 141.415 kb on + strand at 141.415 kb on + strand at 141.415 kb on + strand at 141.416 kb on - strand at 141.416 kb on - strand at 141.416 kb on - strand at 141.416 kb on - strand at 141.427 kb on + strand at 141.428 kb on - strand at 141.436 kb on + strand at 141.437 kb on - strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.438 kb on + strand at 141.439 kb on - strand at 141.439 kb on - strand at 141.439 kb on - strand at 141.439 kb on - strand at 141.439 kb on - strand at 141.439 kb on - strand at 141.487 kb on - strand at 141.621 kb on + strand at 141.621 kb on + strand at 141.621 kb on + strand at 141.621 kb on + strand at 141.621 kb on + strand at 141.622 kb on - strand at 141.624 kb on + strand at 141.625 kb on - strand at 141.625 kb on - strand at 141.653 kb on + strand at 141.654 kb on - strand at 141.654 kb on - strand at 141.654 kb on - strand at 141.654 kb on - strand at 141.654 kb on - strand at 141.668 kb on + strand at 141.668 kb on + strand at 141.668 kb on + strand at 141.668 kb on + strand at 141.669 kb on - strand at 141.669 kb on - strand at 141.669 kb on - strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.725 kb on + strand at 141.726 kb on - strand at 141.726 kb on - strand at 141.726 kb on - strand at 141.726 kb on - strand at 141.726 kb on - strand at 141.726 kb on - strand at 141.774 kb on + strand at 141.791 kb on + strand at 141.792 kb on - strand at 141.813 kb on + strand at 141.816 kb on - strand at 141.816 kb on - strand at 141.899 kb on + strand at 141.899 kb on + strand at 141.900 kb on - strand at 141.900 kb on - strand at 141.920 kb on - strand at 141.970 kb on + strand at 141.971 kb on - strand at 141.971 kb on - strand at 141.995 kb on + strand at 141.996 kb on - strand at 141.996 kb on - strand at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.098 kb on + strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.099 kb on - strand, within Pf1N1B4_5406 at 142.268 kb on + strand at 142.269 kb on - strand at 142.269 kb on - strand at 142.357 kb on + strand at 142.357 kb on + strand at 142.358 kb on - strand at 142.452 kb on - strand at 142.523 kb on - strand at 142.593 kb on + strand, within Pf1N1B4_5407 at 142.665 kb on + strand, within Pf1N1B4_5407 at 142.665 kb on + strand, within Pf1N1B4_5407 at 142.666 kb on - strand, within Pf1N1B4_5407 at 142.666 kb on - strand, within Pf1N1B4_5407 at 142.666 kb on - strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.766 kb on + strand at 142.767 kb on - strand at 142.767 kb on - strand at 142.819 kb on - strand at 142.877 kb on + strand, within Pf1N1B4_5408 at 142.877 kb on + strand, within Pf1N1B4_5408 at 142.877 kb on + strand, within Pf1N1B4_5408 at 142.878 kb on - strand, within Pf1N1B4_5408 at 142.878 kb on - strand, within Pf1N1B4_5408 at 142.878 kb on - strand at 142.879 kb on + strand, within Pf1N1B4_5408 at 142.879 kb on + strand at 142.880 kb on - strand, within Pf1N1B4_5408 at 142.982 kb on - strand, within Pf1N1B4_5408 at 142.989 kb on + strand, within Pf1N1B4_5408 at 142.989 kb on + strand, within Pf1N1B4_5408 at 142.990 kb on - strand, within Pf1N1B4_5408 at 143.064 kb on - strand at 143.081 kb on + strand at 143.134 kb on - strand at 143.134 kb on - strand at 143.134 kb on - strand at 143.169 kb on - strand, within Pf1N1B4_5409
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 141,074 + Pf1N1B4_5405 0.90 +1.3 141,074 + Pf1N1B4_5405 0.90 -0.0 141,074 + Pf1N1B4_5405 0.90 +0.2 141,074 + Pf1N1B4_5405 0.90 -0.0 141,074 + Pf1N1B4_5405 0.90 -0.0 141,075 - Pf1N1B4_5405 0.90 -0.6 141,088 + -0.6 141,088 + +0.6 141,089 - -0.5 141,089 - -2.2 141,092 + +0.7 141,092 + +1.6 141,092 + -0.8 141,092 + +2.0 141,092 + -1.0 141,092 + -0.0 141,093 - -0.4 141,093 - -0.0 141,093 - +0.5 141,093 - -1.0 141,093 - -0.0 141,093 - -1.2 141,093 - +0.4 141,131 + -0.0 141,134 + -0.0 141,156 + -1.6 141,156 + -0.6 141,156 + +1.0 141,157 - -0.4 141,157 - +0.2 141,160 + -0.7 141,160 + -0.6 141,160 + +0.2 141,160 + -0.2 141,160 + +1.0 141,160 + -0.0 141,160 + +0.4 141,161 - +0.7 141,296 + -1.0 141,297 - -1.0 141,297 - +0.7 141,350 - +0.7 141,350 - -1.0 141,350 - -0.0 141,363 - +0.5 141,415 + +0.3 141,415 + -0.0 141,415 + -0.0 141,415 + +1.8 141,415 + +0.1 141,416 - -0.3 141,416 - -0.0 141,416 - -0.0 141,416 - -1.6 141,427 + -1.0 141,428 - -0.6 141,436 + +0.3 141,437 - +0.3 141,438 + -0.0 141,438 + -0.5 141,438 + +0.7 141,438 + -1.2 141,438 + -0.4 141,438 + -1.2 141,438 + -1.0 141,438 + -0.3 141,438 + -0.0 141,438 + -0.0 141,438 + +1.0 141,439 - -1.3 141,439 - -1.6 141,439 - -0.0 141,439 - -1.2 141,439 - +1.8 141,439 - +0.6 141,487 - +2.0 141,621 + +0.2 141,621 + -0.6 141,621 + -0.0 141,621 + -0.8 141,621 + -0.0 141,622 - +1.2 141,624 + -0.5 141,625 - +1.0 141,625 - +0.6 141,653 + +0.4 141,654 - -0.0 141,654 - -1.0 141,654 - -0.0 141,654 - +0.6 141,654 - -0.0 141,668 + +0.0 141,668 + -2.0 141,668 + -0.4 141,668 + -0.7 141,669 - -0.8 141,669 - -0.0 141,669 - -2.1 141,725 + +0.2 141,725 + -0.2 141,725 + -0.8 141,725 + -0.7 141,725 + -1.6 141,725 + -0.6 141,725 + -2.0 141,725 + +0.2 141,725 + -0.5 141,726 - +1.0 141,726 - +0.6 141,726 - +1.0 141,726 - -0.8 141,726 - -0.0 141,726 - -0.0 141,774 + +0.6 141,791 + -0.0 141,792 - +0.2 141,813 + +0.2 141,816 - -0.0 141,816 - -1.8 141,899 + -0.8 141,899 + +0.3 141,900 - +1.0 141,900 - +2.1 141,920 - -0.4 141,970 + +0.3 141,971 - -1.0 141,971 - +0.2 141,995 + -0.2 141,996 - -0.0 141,996 - -0.0 142,098 + Pf1N1B4_5406 0.35 -0.0 142,098 + Pf1N1B4_5406 0.35 -0.0 142,098 + Pf1N1B4_5406 0.35 -1.1 142,098 + Pf1N1B4_5406 0.35 -0.6 142,098 + Pf1N1B4_5406 0.35 -1.0 142,098 + Pf1N1B4_5406 0.35 -0.0 142,098 + Pf1N1B4_5406 0.35 -0.8 142,099 - Pf1N1B4_5406 0.36 +1.0 142,099 - Pf1N1B4_5406 0.36 -1.0 142,099 - Pf1N1B4_5406 0.36 -0.3 142,099 - Pf1N1B4_5406 0.36 -0.8 142,099 - Pf1N1B4_5406 0.36 +0.6 142,099 - Pf1N1B4_5406 0.36 -1.0 142,099 - Pf1N1B4_5406 0.36 +1.0 142,268 + -0.6 142,269 - -0.0 142,269 - -0.0 142,357 + -0.4 142,357 + -0.4 142,358 - +1.0 142,452 - -0.0 142,523 - +0.6 142,593 + Pf1N1B4_5407 0.19 -0.8 142,665 + Pf1N1B4_5407 0.53 +0.2 142,665 + Pf1N1B4_5407 0.53 -0.8 142,666 - Pf1N1B4_5407 0.54 +2.3 142,666 - Pf1N1B4_5407 0.54 -1.6 142,666 - +1.6 142,766 + +1.0 142,766 + -0.3 142,766 + +1.2 142,766 + +1.4 142,766 + -1.8 142,766 + +0.3 142,767 - +1.6 142,767 - +0.7 142,819 - +0.6 142,877 + Pf1N1B4_5408 0.19 -1.0 142,877 + Pf1N1B4_5408 0.19 +1.6 142,877 + Pf1N1B4_5408 0.19 +0.6 142,878 - Pf1N1B4_5408 0.20 -0.0 142,878 - Pf1N1B4_5408 0.20 -0.0 142,878 - +1.6 142,879 + Pf1N1B4_5408 0.20 -0.5 142,879 + +2.0 142,880 - Pf1N1B4_5408 0.21 +1.0 142,982 - Pf1N1B4_5408 0.64 -0.6 142,989 + Pf1N1B4_5408 0.67 +1.0 142,989 + Pf1N1B4_5408 0.67 -0.5 142,990 - Pf1N1B4_5408 0.68 -0.0 143,064 - -1.0 143,081 + -0.8 143,134 - -1.2 143,134 - +1.0 143,134 - -0.3 143,169 - Pf1N1B4_5409 0.14 +1.3
Or see this region's nucleotide sequence