Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3005

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
3,378,115	-		Pf1N1B4_3004	0.42	-2.0
3,378,166	+		Pf1N1B4_3004	0.46	+0.7
3,378,173	-		Pf1N1B4_3004	0.47	+1.2
3,378,173	-		Pf1N1B4_3004	0.47	-0.1
3,378,322	+		Pf1N1B4_3004	0.59	-1.2
3,378,322	+		Pf1N1B4_3004	0.59	+0.8
3,378,322	+		Pf1N1B4_3004	0.59	-0.6
3,378,322	+		Pf1N1B4_3004	0.59	+1.1
3,378,322	+		Pf1N1B4_3004	0.59	-1.7
3,378,322	+		Pf1N1B4_3004	0.59	+1.7
3,378,322	+		Pf1N1B4_3004	0.59	+1.1
3,378,322	+		Pf1N1B4_3004	0.59	-1.5
3,378,323	-		Pf1N1B4_3004	0.59	+0.1
3,378,323	-		Pf1N1B4_3004	0.59	-0.7
3,378,323	-		Pf1N1B4_3004	0.59	-1.2
3,378,323	-		Pf1N1B4_3004	0.59	+1.7
3,378,323	-		Pf1N1B4_3004	0.59	-0.4
3,378,323	-		Pf1N1B4_3004	0.59	+0.1
3,378,338	+		Pf1N1B4_3004	0.60	+0.1
3,378,339	-		Pf1N1B4_3004	0.60	-0.5
3,378,339	-		Pf1N1B4_3004	0.60	-0.7
3,378,339	-		Pf1N1B4_3004	0.60	-0.2
3,378,339	-		Pf1N1B4_3004	0.60	-0.2
3,378,496	+		Pf1N1B4_3004	0.72	+0.1
3,378,496	+		Pf1N1B4_3004	0.72	+0.1
3,378,496	+		Pf1N1B4_3004	0.72	+0.7
3,378,496	+				+0.1
3,378,497	-		Pf1N1B4_3004	0.73	+1.7
3,378,497	-		Pf1N1B4_3004	0.73	-0.2
3,378,541	+		Pf1N1B4_3004	0.76	+0.7
3,378,541	+		Pf1N1B4_3004	0.76	+0.1
3,378,541	+		Pf1N1B4_3004	0.76	+0.4
3,378,541	+		Pf1N1B4_3004	0.76	-0.9
3,378,541	+		Pf1N1B4_3004	0.76	-0.7
3,378,542	-		Pf1N1B4_3004	0.76	+0.8
3,378,542	-				+0.1
3,378,542	-		Pf1N1B4_3004	0.76	-0.7
3,378,542	-		Pf1N1B4_3004	0.76	+0.1
3,378,596	+		Pf1N1B4_3004	0.80	+1.1
3,378,616	-		Pf1N1B4_3004	0.82	-0.2
3,378,616	-		Pf1N1B4_3004	0.82	-1.2
3,378,641	+		Pf1N1B4_3004	0.84	+1.7
3,378,641	+		Pf1N1B4_3004	0.84	+0.1
3,378,641	+		Pf1N1B4_3004	0.84	-0.2
3,378,779	+				-0.9
3,378,779	+				-0.5
3,378,780	-				-0.6
3,378,800	-				+0.1
3,378,824	+				-0.6
3,378,824	+				+0.1
3,378,824	+				-2.2
3,378,825	-				+0.7
3,378,825	-				-1.9
3,378,828	+				+1.1
3,378,828	+				+0.7
3,378,887	-				-0.4
3,378,907	-				-0.9
3,378,907	-				-0.6
3,378,907	-				-1.9
3,378,907	-				+0.7
3,378,907	-				-0.2
3,378,907	-				+0.1
3,378,907	-				+0.1
3,378,907	-				+0.7
3,378,907	-				+0.1
3,378,907	-				+0.1
3,378,907	-				+0.1
3,378,907	-				+1.1
3,378,907	-				-1.3
3,378,907	-				-2.2
3,378,907	-				+0.2
3,378,907	-				-1.7
3,378,907	-				-0.5
3,378,907	-				+0.6
3,378,907	-				-0.2
3,378,909	-				+2.4
3,378,909	-				-0.5
3,378,909	-				+0.1
3,378,909	-				-0.7
3,378,909	-				+0.1
3,378,909	-				+0.4
3,379,042	+				+0.1
3,379,043	-				-0.7
3,379,043	-				-0.4
3,379,043	-				+1.1
3,379,043	-				+1.4
3,379,087	+				+0.6
3,379,088	-				+0.1
3,379,119	+				+0.8
3,379,543	+		Pf1N1B4_3005	0.41	-0.5
3,379,543	+		Pf1N1B4_3005	0.41	+0.7
3,379,543	+		Pf1N1B4_3005	0.41	+0.1
3,379,543	+		Pf1N1B4_3005	0.41	+0.1
3,379,543	+		Pf1N1B4_3005	0.41	-0.9
3,379,543	+		Pf1N1B4_3005	0.41	+0.1
3,379,543	+		Pf1N1B4_3005	0.41	-0.5
3,379,543	+				-1.9
3,379,543	+		Pf1N1B4_3005	0.41	-1.9
3,379,543	+		Pf1N1B4_3005	0.41	-0.9
3,379,543	+		Pf1N1B4_3005	0.41	+2.1
3,379,544	-		Pf1N1B4_3005	0.42	-0.5
3,379,544	-		Pf1N1B4_3005	0.42	-0.9
3,379,544	-		Pf1N1B4_3005	0.42	-0.2
3,379,544	-		Pf1N1B4_3005	0.42	-1.2
3,379,544	-		Pf1N1B4_3005	0.42	-0.9
3,379,544	-		Pf1N1B4_3005	0.42	-1.9
3,379,544	-		Pf1N1B4_3005	0.42	-0.5
3,379,544	-		Pf1N1B4_3005	0.42	-0.9
3,379,544	-		Pf1N1B4_3005	0.42	-1.5
3,379,544	-		Pf1N1B4_3005	0.42	-1.2
3,379,544	-		Pf1N1B4_3005	0.42	+0.1
3,379,545	+		Pf1N1B4_3005	0.42	-0.5
3,379,545	+				-0.9
3,379,545	+		Pf1N1B4_3005	0.42	+0.1
3,379,545	+		Pf1N1B4_3005	0.42	-1.5
3,379,545	+		Pf1N1B4_3005	0.42	-0.9
3,379,545	+		Pf1N1B4_3005	0.42	-0.3
3,379,545	+		Pf1N1B4_3005	0.42	+1.1
3,379,545	+		Pf1N1B4_3005	0.42	-1.3
3,379,545	+		Pf1N1B4_3005	0.42	+0.1
3,379,545	+		Pf1N1B4_3005	0.42	-0.7
3,379,545	+				-0.5
3,379,545	+		Pf1N1B4_3005	0.42	-0.4
3,379,545	+		Pf1N1B4_3005	0.42	+0.1
3,379,545	+		Pf1N1B4_3005	0.42	-2.2
3,379,545	+				+2.1
3,379,545	+		Pf1N1B4_3005	0.42	+0.4
3,379,545	+		Pf1N1B4_3005	0.42	+0.1
3,379,545	+		Pf1N1B4_3005	0.42	+0.7
3,379,546	-		Pf1N1B4_3005	0.42	-0.3
3,379,546	-		Pf1N1B4_3005	0.42	-0.9
3,379,546	-		Pf1N1B4_3005	0.42	-1.9
3,379,546	-		Pf1N1B4_3005	0.42	+1.1
3,379,546	-		Pf1N1B4_3005	0.42	+0.1
3,379,546	-		Pf1N1B4_3005	0.42	-1.9
3,379,546	-		Pf1N1B4_3005	0.42	+0.1
3,379,547	+		Pf1N1B4_3005	0.42	-0.3
3,379,547	+		Pf1N1B4_3005	0.42	-0.5
3,379,547	+		Pf1N1B4_3005	0.42	-0.5
3,379,547	+		Pf1N1B4_3005	0.42	+0.1
3,379,547	+		Pf1N1B4_3005	0.42	-0.3
3,379,547	+		Pf1N1B4_3005	0.42	-0.2
3,379,547	+		Pf1N1B4_3005	0.42	-1.5
3,379,547	+		Pf1N1B4_3005	0.42	-1.5
3,379,547	+		Pf1N1B4_3005	0.42	+0.8
3,379,547	+		Pf1N1B4_3005	0.42	+0.3
3,379,548	-		Pf1N1B4_3005	0.42	-2.2
3,379,548	-		Pf1N1B4_3005	0.42	-0.9
3,379,548	-		Pf1N1B4_3005	0.42	-0.9
3,379,595	-		Pf1N1B4_3005	0.46	-0.9
3,379,595	-		Pf1N1B4_3005	0.46	-0.3
3,379,595	-		Pf1N1B4_3005	0.46	+1.1
3,379,595	-		Pf1N1B4_3005	0.46	-0.9
3,379,858	-		Pf1N1B4_3005	0.71	-0.3
3,379,924	-		Pf1N1B4_3005	0.77	-1.7
3,379,929	+		Pf1N1B4_3005	0.78	-1.1
3,379,929	+		Pf1N1B4_3005	0.78	+0.7
3,379,929	+		Pf1N1B4_3005	0.78	-2.2
3,379,929	+		Pf1N1B4_3005	0.78	-0.6
3,379,929	+		Pf1N1B4_3005	0.78	-1.3
3,379,929	+		Pf1N1B4_3005	0.78	-0.4
3,379,929	+		Pf1N1B4_3005	0.78	-0.9
3,379,930	-		Pf1N1B4_3005	0.78	-0.9
3,379,930	-		Pf1N1B4_3005	0.78	+1.7
3,379,930	-		Pf1N1B4_3005	0.78	-1.2
3,379,930	-		Pf1N1B4_3005	0.78	-0.1
3,379,930	-		Pf1N1B4_3005	0.78	-0.4
3,380,050	+		Pf1N1B4_3005	0.89	-1.1
3,380,050	+		Pf1N1B4_3005	0.89	-0.9
3,380,050	+		Pf1N1B4_3005	0.89	+0.1
3,380,050	+		Pf1N1B4_3005	0.89	-0.9
3,380,050	+		Pf1N1B4_3005	0.89	+0.7
3,380,051	-		Pf1N1B4_3005	0.89	-0.2
3,380,052	+		Pf1N1B4_3005	0.89	-3.2
3,380,053	-		Pf1N1B4_3005	0.89	-0.9
3,380,089	+				-1.7
3,380,106	+				+2.1
3,380,106	+				-2.2
3,380,106	+				-0.7
3,380,107	-				-0.9
3,380,107	-				+1.1
3,380,115	+				+1.5
3,380,127	+				+2.1
3,380,127	+				-0.4
3,380,127	+				+1.7
3,380,127	+				+1.1
3,380,127	+				-0.9
3,380,127	+				+1.1
3,380,127	+				-1.5
3,380,127	+				-0.7
3,380,128	-				-0.9
3,380,128	-				-1.5
3,380,283	+		Pf1N1B4_3006	0.11	-0.5
3,380,284	-				+1.1
3,380,742	-		Pf1N1B4_3006	0.51	-2.2
3,380,862	+		Pf1N1B4_3006	0.62	-0.7
3,380,862	+		Pf1N1B4_3006	0.62	-0.5
3,380,903	+				+0.1
3,381,014	+		Pf1N1B4_3006	0.75	+0.1
3,381,014	+		Pf1N1B4_3006	0.75	-1.5
3,381,014	+		Pf1N1B4_3006	0.75	-0.9
3,381,014	+		Pf1N1B4_3006	0.75	-0.2
3,381,087	+		Pf1N1B4_3006	0.81	-0.3
3,381,087	+		Pf1N1B4_3006	0.81	-1.5
3,381,087	+		Pf1N1B4_3006	0.81	-1.9
3,381,087	+				+0.1
3,381,087	+		Pf1N1B4_3006	0.81	-0.7
3,381,089	+		Pf1N1B4_3006	0.82	-0.9
3,381,089	+		Pf1N1B4_3006	0.82	-1.5
3,381,089	+		Pf1N1B4_3006	0.82	+0.1
3,381,089	+		Pf1N1B4_3006	0.82	+2.1
3,381,089	+		Pf1N1B4_3006	0.82	-1.5
3,381,089	+		Pf1N1B4_3006	0.82	+0.1
3,381,089	+		Pf1N1B4_3006	0.82	-0.9
3,381,089	+		Pf1N1B4_3006	0.82	-0.9
3,381,114	+		Pf1N1B4_3006	0.84	-0.9
3,381,114	+		Pf1N1B4_3006	0.84	-1.5
3,381,114	+		Pf1N1B4_3006	0.84	+0.5
3,381,114	+		Pf1N1B4_3006	0.84	-1.9
3,381,114	+		Pf1N1B4_3006	0.84	-1.9
3,381,114	+		Pf1N1B4_3006	0.84	-1.1
3,381,164	+		Pf1N1B4_3006	0.88	-0.4
3,381,164	+		Pf1N1B4_3006	0.88	-0.9
3,381,164	+		Pf1N1B4_3006	0.88	+0.1
3,381,164	+		Pf1N1B4_3006	0.88	-1.9