Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_840

Experiment: LB, pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_838 and Ac3H11_839 are separated by 138 nucleotidesAc3H11_839 and Ac3H11_840 are separated by 9 nucleotidesAc3H11_840 and Ac3H11_841 are separated by 17 nucleotidesAc3H11_841 and Ac3H11_842 are separated by 181 nucleotides Ac3H11_838 - transcriptional regulator, TetR family, at 120,505 to 121,374 _838 Ac3H11_839 - transcriptional regulator, MerR family, at 121,513 to 121,707 _839 Ac3H11_840 - putative cinnamoyl-CoA reductase, at 121,717 to 122,745 _840 Ac3H11_841 - hypothetical protein, at 122,763 to 123,155 _841 Ac3H11_842 - Predicted transcriptional regulator, at 123,337 to 124,068 _842 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.863 kb on + strand, within Ac3H11_838at 120.864 kb on - strand, within Ac3H11_838at 120.884 kb on + strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.885 kb on - strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.893 kb on + strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 120.894 kb on - strand, within Ac3H11_838at 121.193 kb on + strand, within Ac3H11_838at 121.193 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.226 kb on + strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.227 kb on - strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.232 kb on + strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.233 kb on - strand, within Ac3H11_838at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.596 kb on - strand, within Ac3H11_839at 121.788 kb on - strandat 121.788 kb on - strandat 121.798 kb on + strandat 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.859 kb on + strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 121.860 kb on - strand, within Ac3H11_840at 122.009 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.279 kb on + strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.280 kb on - strand, within Ac3H11_840at 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.701 kb on + strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.702 kb on - strandat 122.726 kb on + strandat 122.726 kb on + strandat 123.036 kb on - strand, within Ac3H11_841at 123.118 kb on + strandat 123.119 kb on - strandat 123.119 kb on - strandat 123.119 kb on - strandat 123.323 kb on - strandat 123.323 kb on - strandat 123.398 kb on + strandat 123.398 kb on + strandat 123.566 kb on + strand, within Ac3H11_842at 123.567 kb on - strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.705 kb on - strand, within Ac3H11_842at 123.705 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
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120,863 + Ac3H11_838 0.41 -0.4
120,863 + Ac3H11_838 0.41 -1.1
120,863 + Ac3H11_838 0.41 -1.8
120,863 + Ac3H11_838 0.41 +1.3
120,863 + Ac3H11_838 0.41 +0.2
120,864 - Ac3H11_838 0.41 -0.0
120,884 + Ac3H11_838 0.44 +0.3
120,885 - Ac3H11_838 0.44 -0.4
120,885 - Ac3H11_838 0.44 +0.4
120,885 - Ac3H11_838 0.44 -0.5
120,893 + Ac3H11_838 0.45 +0.1
120,893 + Ac3H11_838 0.45 +1.3
120,893 + Ac3H11_838 0.45 +0.6
120,893 + Ac3H11_838 0.45 -0.1
120,893 + Ac3H11_838 0.45 +1.0
120,894 - Ac3H11_838 0.45 +0.1
120,894 - Ac3H11_838 0.45 +0.1
120,894 - Ac3H11_838 0.45 +0.0
120,894 - Ac3H11_838 0.45 -0.0
121,193 + Ac3H11_838 0.79 -0.2
121,193 + Ac3H11_838 0.79 +0.1
121,226 + Ac3H11_838 0.83 -0.1
121,226 + Ac3H11_838 0.83 -0.8
121,226 + Ac3H11_838 0.83 -0.1
121,226 + Ac3H11_838 0.83 -0.7
121,226 + Ac3H11_838 0.83 +0.3
121,226 + Ac3H11_838 0.83 -0.2
121,227 - Ac3H11_838 0.83 -0.2
121,227 - Ac3H11_838 0.83 -0.9
121,227 - Ac3H11_838 0.83 +0.1
121,227 - Ac3H11_838 0.83 +1.3
121,227 - Ac3H11_838 0.83 +0.5
121,227 - Ac3H11_838 0.83 +0.2
121,227 - Ac3H11_838 0.83 +0.7
121,227 - Ac3H11_838 0.83 +0.4
121,227 - Ac3H11_838 0.83 -0.3
121,232 + Ac3H11_838 0.84 -0.6
121,232 + Ac3H11_838 0.84 -0.6
121,232 + Ac3H11_838 0.84 +0.1
121,232 + Ac3H11_838 0.84 +0.2
121,232 + Ac3H11_838 0.84 +0.3
121,232 + Ac3H11_838 0.84 -0.0
121,232 + Ac3H11_838 0.84 -0.1
121,233 - Ac3H11_838 0.84 +1.4
121,233 - Ac3H11_838 0.84 -0.7
121,233 - Ac3H11_838 0.84 -0.1
121,233 - Ac3H11_838 0.84 -0.6
121,233 - Ac3H11_838 0.84 +0.6
121,233 - Ac3H11_838 0.84 -0.3
121,233 - Ac3H11_838 0.84 -0.3
121,596 - Ac3H11_839 0.43 -1.3
121,596 - Ac3H11_839 0.43 -1.7
121,596 - Ac3H11_839 0.43 -1.2
121,596 - Ac3H11_839 0.43 -0.1
121,596 - Ac3H11_839 0.43 +0.1
121,788 - +0.6
121,788 - +0.1
121,798 + +0.4
121,859 + Ac3H11_840 0.14 +0.1
121,859 + Ac3H11_840 0.14 +0.3
121,859 + Ac3H11_840 0.14 +0.2
121,859 + Ac3H11_840 0.14 -0.2
121,859 + Ac3H11_840 0.14 -0.3
121,859 + Ac3H11_840 0.14 -1.2
121,859 + Ac3H11_840 0.14 +0.2
121,859 + Ac3H11_840 0.14 +0.2
121,859 + Ac3H11_840 0.14 +1.7
121,860 - Ac3H11_840 0.14 -0.9
121,860 - Ac3H11_840 0.14 -0.5
121,860 - Ac3H11_840 0.14 -0.4
121,860 - Ac3H11_840 0.14 +1.2
121,860 - Ac3H11_840 0.14 -0.8
122,009 + Ac3H11_840 0.28 +1.0
122,279 + Ac3H11_840 0.55 -0.2
122,279 + Ac3H11_840 0.55 -0.8
122,280 - Ac3H11_840 0.55 +0.8
122,280 - Ac3H11_840 0.55 +0.5
122,280 - Ac3H11_840 0.55 -1.1
122,701 + +0.9
122,701 + +0.0
122,701 + +0.3
122,701 + -0.3
122,701 + -1.1
122,701 + +0.1
122,702 - -0.1
122,702 - +1.1
122,702 - -0.4
122,702 - +0.2
122,702 - +0.0
122,702 - -0.0
122,726 + -2.1
122,726 + +0.0
123,036 - Ac3H11_841 0.69 +0.5
123,118 + +0.3
123,119 - +0.2
123,119 - +0.4
123,119 - +0.3
123,323 - -0.7
123,323 - -0.6
123,398 + +0.5
123,398 + -1.2
123,566 + Ac3H11_842 0.31 -0.7
123,567 - Ac3H11_842 0.31 +0.2
123,593 + Ac3H11_842 0.35 -0.1
123,593 + Ac3H11_842 0.35 -1.0
123,593 + Ac3H11_842 0.35 +0.3
123,594 - Ac3H11_842 0.35 -1.0
123,594 - Ac3H11_842 0.35 -1.1
123,594 - Ac3H11_842 0.35 +0.4
123,594 - Ac3H11_842 0.35 +0.5
123,594 - Ac3H11_842 0.35 +0.1
123,704 + Ac3H11_842 0.50 +0.1
123,704 + Ac3H11_842 0.50 +0.1
123,704 + Ac3H11_842 0.50 +0.0
123,705 - Ac3H11_842 0.50 +1.2
123,705 - Ac3H11_842 0.50 +0.6
123,735 - Ac3H11_842 0.54 +0.1
123,735 - Ac3H11_842 0.54 +0.1
123,735 - Ac3H11_842 0.54 +0.3

Or see this region's nucleotide sequence