Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3717

Experiment: LB, pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3716 and Ac3H11_3717 are separated by 28 nucleotidesAc3H11_3717 and Ac3H11_3718 are separated by 46 nucleotidesAc3H11_3718 and Ac3H11_3719 are separated by 36 nucleotides Ac3H11_3716 - Adenylate cyclase (EC 4.6.1.1), at 76,328 to 77,383 _3716 Ac3H11_3717 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 77,412 to 78,140 _3717 Ac3H11_3718 - hypothetical protein, at 78,187 to 78,357 _3718 Ac3H11_3719 - FIG00978734: hypothetical protein, at 78,394 to 79,617 _3719 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2at 76.829 kb on + strand, within Ac3H11_3716at 76.829 kb on + strand, within Ac3H11_3716at 76.916 kb on + strand, within Ac3H11_3716at 76.917 kb on - strand, within Ac3H11_3716at 76.917 kb on - strand, within Ac3H11_3716at 76.917 kb on - strand, within Ac3H11_3716at 76.917 kb on - strand, within Ac3H11_3716at 76.964 kb on + strand, within Ac3H11_3716at 76.964 kb on + strand, within Ac3H11_3716at 76.965 kb on - strand, within Ac3H11_3716at 76.965 kb on - strand, within Ac3H11_3716at 76.965 kb on - strand, within Ac3H11_3716at 76.965 kb on - strand, within Ac3H11_3716at 77.241 kb on - strand, within Ac3H11_3716at 77.258 kb on + strand, within Ac3H11_3716at 77.258 kb on + strand, within Ac3H11_3716at 77.258 kb on + strand, within Ac3H11_3716at 77.258 kb on + strand, within Ac3H11_3716at 77.258 kb on + strand, within Ac3H11_3716at 77.259 kb on - strand, within Ac3H11_3716at 77.259 kb on - strand, within Ac3H11_3716at 77.259 kb on - strand, within Ac3H11_3716at 77.259 kb on - strand, within Ac3H11_3716at 77.373 kb on + strandat 77.527 kb on + strand, within Ac3H11_3717at 77.527 kb on + strand, within Ac3H11_3717at 77.527 kb on + strand, within Ac3H11_3717at 77.635 kb on + strand, within Ac3H11_3717at 77.635 kb on + strand, within Ac3H11_3717at 77.635 kb on + strand, within Ac3H11_3717at 77.636 kb on - strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.657 kb on - strand, within Ac3H11_3717at 77.657 kb on - strand, within Ac3H11_3717at 78.019 kb on + strand, within Ac3H11_3717at 78.019 kb on + strand, within Ac3H11_3717at 78.188 kb on + strandat 78.188 kb on + strandat 78.188 kb on + strandat 78.188 kb on + strandat 78.261 kb on + strand, within Ac3H11_3718at 78.261 kb on + strand, within Ac3H11_3718at 78.261 kb on + strand, within Ac3H11_3718at 78.261 kb on + strand, within Ac3H11_3718at 78.262 kb on - strand, within Ac3H11_3718at 78.290 kb on + strand, within Ac3H11_3718at 78.290 kb on + strand, within Ac3H11_3718at 78.589 kb on + strand, within Ac3H11_3719at 78.590 kb on - strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.722 kb on - strand, within Ac3H11_3719at 78.772 kb on + strand, within Ac3H11_3719at 78.772 kb on + strand, within Ac3H11_3719at 78.772 kb on + strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.112 kb on - strand, within Ac3H11_3719

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
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76,829 + Ac3H11_3716 0.47 -0.4
76,829 + Ac3H11_3716 0.47 +1.1
76,916 + Ac3H11_3716 0.56 +1.1
76,917 - Ac3H11_3716 0.56 +1.2
76,917 - Ac3H11_3716 0.56 -0.7
76,917 - Ac3H11_3716 0.56 -0.5
76,917 - Ac3H11_3716 0.56 -0.7
76,964 + Ac3H11_3716 0.60 +1.0
76,964 + Ac3H11_3716 0.60 -0.3
76,965 - Ac3H11_3716 0.60 +0.6
76,965 - Ac3H11_3716 0.60 -0.3
76,965 - Ac3H11_3716 0.60 +2.6
76,965 - Ac3H11_3716 0.60 -2.0
77,241 - Ac3H11_3716 0.86 -0.6
77,258 + Ac3H11_3716 0.88 +0.9
77,258 + Ac3H11_3716 0.88 +0.0
77,258 + Ac3H11_3716 0.88 -1.3
77,258 + Ac3H11_3716 0.88 +0.4
77,258 + Ac3H11_3716 0.88 -0.9
77,259 - Ac3H11_3716 0.88 -1.6
77,259 - Ac3H11_3716 0.88 +1.0
77,259 - Ac3H11_3716 0.88 -0.5
77,259 - Ac3H11_3716 0.88 -1.3
77,373 + -0.5
77,527 + Ac3H11_3717 0.16 +0.7
77,527 + Ac3H11_3717 0.16 +0.6
77,527 + Ac3H11_3717 0.16 +1.4
77,635 + Ac3H11_3717 0.31 +0.4
77,635 + Ac3H11_3717 0.31 -0.5
77,635 + Ac3H11_3717 0.31 -0.2
77,636 - Ac3H11_3717 0.31 -0.1
77,656 + Ac3H11_3717 0.33 -1.7
77,656 + Ac3H11_3717 0.33 +0.9
77,656 + Ac3H11_3717 0.33 -0.5
77,656 + Ac3H11_3717 0.33 +0.3
77,657 - Ac3H11_3717 0.34 +1.0
77,657 - Ac3H11_3717 0.34 +0.2
78,019 + Ac3H11_3717 0.83 -0.9
78,019 + Ac3H11_3717 0.83 +0.7
78,188 + +0.3
78,188 + +0.6
78,188 + +0.2
78,188 + -0.6
78,261 + Ac3H11_3718 0.43 +0.3
78,261 + Ac3H11_3718 0.43 -0.4
78,261 + Ac3H11_3718 0.43 +0.6
78,261 + Ac3H11_3718 0.43 -0.1
78,262 - Ac3H11_3718 0.44 -0.0
78,290 + Ac3H11_3718 0.60 -0.1
78,290 + Ac3H11_3718 0.60 -0.4
78,589 + Ac3H11_3719 0.16 +0.4
78,590 - Ac3H11_3719 0.16 +1.3
78,682 + Ac3H11_3719 0.24 +0.2
78,682 + Ac3H11_3719 0.24 -0.4
78,682 + Ac3H11_3719 0.24 +0.1
78,682 + Ac3H11_3719 0.24 -0.4
78,682 + Ac3H11_3719 0.24 +0.5
78,682 + Ac3H11_3719 0.24 -0.5
78,682 + Ac3H11_3719 0.24 -0.3
78,682 + Ac3H11_3719 0.24 +0.5
78,682 + Ac3H11_3719 0.24 -0.2
78,682 + Ac3H11_3719 0.24 +0.3
78,683 - Ac3H11_3719 0.24 +0.5
78,683 - Ac3H11_3719 0.24 -0.2
78,683 - Ac3H11_3719 0.24 -1.0
78,683 - Ac3H11_3719 0.24 -0.7
78,683 - Ac3H11_3719 0.24 -0.2
78,683 - Ac3H11_3719 0.24 -0.5
78,722 - Ac3H11_3719 0.27 +0.6
78,772 + Ac3H11_3719 0.31 +1.1
78,772 + Ac3H11_3719 0.31 -0.9
78,772 + Ac3H11_3719 0.31 -1.1
78,773 - Ac3H11_3719 0.31 -0.4
78,773 - Ac3H11_3719 0.31 +0.4
78,773 - Ac3H11_3719 0.31 -0.3
78,773 - Ac3H11_3719 0.31 +1.2
79,111 + Ac3H11_3719 0.59 -0.2
79,111 + Ac3H11_3719 0.59 +0.0
79,111 + Ac3H11_3719 0.59 +0.4
79,111 + Ac3H11_3719 0.59 +0.1
79,111 + Ac3H11_3719 0.59 +0.2
79,112 - Ac3H11_3719 0.59 -0.1

Or see this region's nucleotide sequence