Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3341

Experiment: LB, pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3339 and Ac3H11_3340 are separated by 148 nucleotidesAc3H11_3340 and Ac3H11_3341 are separated by 33 nucleotidesAc3H11_3341 and Ac3H11_3342 are separated by 10 nucleotidesAc3H11_3342 and Ac3H11_3343 are separated by 84 nucleotides Ac3H11_3339 - Aspartyl-tRNA(Asn) amidotransferase subunit B (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit B (EC 6.3.5.7), at 18,206 to 19,654 _3339 Ac3H11_3340 - Exonuclease SbcC, at 19,803 to 20,462 _3340 Ac3H11_3341 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 20,496 to 21,194 _3341 Ac3H11_3342 - Exodeoxyribonuclease III (EC 3.1.11.2), at 21,205 to 22,008 _3342 Ac3H11_3343 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 22,093 to 23,934 _3343 Position (kb) 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 19.805 kb on - strandat 20.026 kb on + strand, within Ac3H11_3340at 20.026 kb on + strand, within Ac3H11_3340at 20.027 kb on - strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.392 kb on + strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.393 kb on - strand, within Ac3H11_3340at 20.585 kb on - strand, within Ac3H11_3341at 20.592 kb on + strand, within Ac3H11_3341at 20.593 kb on - strand, within Ac3H11_3341at 20.593 kb on - strand, within Ac3H11_3341at 20.593 kb on - strand, within Ac3H11_3341at 20.951 kb on - strand, within Ac3H11_3341at 20.951 kb on - strand, within Ac3H11_3341at 21.216 kb on - strandat 21.297 kb on + strand, within Ac3H11_3342at 21.297 kb on + strand, within Ac3H11_3342at 21.297 kb on + strand, within Ac3H11_3342at 21.297 kb on + strand, within Ac3H11_3342at 21.297 kb on + strand, within Ac3H11_3342at 21.298 kb on - strand, within Ac3H11_3342at 21.298 kb on - strand, within Ac3H11_3342at 21.298 kb on - strand, within Ac3H11_3342at 21.298 kb on - strand, within Ac3H11_3342at 21.298 kb on - strand, within Ac3H11_3342at 21.401 kb on - strand, within Ac3H11_3342at 21.401 kb on - strand, within Ac3H11_3342at 21.410 kb on + strand, within Ac3H11_3342at 21.410 kb on + strand, within Ac3H11_3342at 21.411 kb on - strand, within Ac3H11_3342at 21.411 kb on - strand, within Ac3H11_3342at 21.411 kb on - strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.418 kb on + strand, within Ac3H11_3342at 21.419 kb on - strand, within Ac3H11_3342at 21.419 kb on - strand, within Ac3H11_3342at 21.419 kb on - strand, within Ac3H11_3342at 21.443 kb on + strand, within Ac3H11_3342at 21.444 kb on - strand, within Ac3H11_3342at 21.444 kb on - strand, within Ac3H11_3342at 21.446 kb on + strand, within Ac3H11_3342at 21.446 kb on + strand, within Ac3H11_3342at 21.446 kb on + strand, within Ac3H11_3342at 21.447 kb on - strand, within Ac3H11_3342at 21.447 kb on - strand, within Ac3H11_3342at 21.487 kb on + strand, within Ac3H11_3342at 21.487 kb on + strand, within Ac3H11_3342at 21.487 kb on + strand, within Ac3H11_3342at 21.487 kb on + strand, within Ac3H11_3342at 21.487 kb on + strand, within Ac3H11_3342at 21.488 kb on - strand, within Ac3H11_3342at 21.488 kb on - strand, within Ac3H11_3342at 21.488 kb on - strand, within Ac3H11_3342at 21.488 kb on - strand, within Ac3H11_3342at 21.488 kb on - strand, within Ac3H11_3342at 21.541 kb on + strand, within Ac3H11_3342at 21.542 kb on - strand, within Ac3H11_3342at 21.542 kb on - strand, within Ac3H11_3342at 21.800 kb on - strand, within Ac3H11_3342at 21.810 kb on - strand, within Ac3H11_3342at 21.835 kb on + strand, within Ac3H11_3342at 21.835 kb on + strand, within Ac3H11_3342at 21.835 kb on + strand, within Ac3H11_3342at 21.835 kb on + strand, within Ac3H11_3342at 21.836 kb on - strand, within Ac3H11_3342at 21.836 kb on - strand, within Ac3H11_3342at 21.836 kb on - strand, within Ac3H11_3342at 21.836 kb on - strand, within Ac3H11_3342at 21.865 kb on + strand, within Ac3H11_3342at 21.865 kb on + strand, within Ac3H11_3342at 21.865 kb on + strand, within Ac3H11_3342at 21.865 kb on + strand, within Ac3H11_3342at 21.866 kb on - strand, within Ac3H11_3342at 21.866 kb on - strand, within Ac3H11_3342at 21.895 kb on + strand, within Ac3H11_3342at 21.895 kb on + strand, within Ac3H11_3342at 21.895 kb on + strand, within Ac3H11_3342at 21.896 kb on - strand, within Ac3H11_3342at 21.896 kb on - strand, within Ac3H11_3342at 21.946 kb on + strandat 21.946 kb on + strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.947 kb on - strandat 21.991 kb on + strandat 21.992 kb on - strandat 21.992 kb on - strandat 21.992 kb on - strandat 22.004 kb on + strandat 22.004 kb on + strandat 22.004 kb on + strandat 22.005 kb on - strandat 22.005 kb on - strandat 22.005 kb on - strandat 22.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
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19,805 - -0.6
20,026 + Ac3H11_3340 0.34 +0.5
20,026 + Ac3H11_3340 0.34 +0.3
20,027 - Ac3H11_3340 0.34 +0.1
20,392 + Ac3H11_3340 0.89 -0.1
20,392 + Ac3H11_3340 0.89 -0.6
20,392 + Ac3H11_3340 0.89 -0.1
20,392 + Ac3H11_3340 0.89 +0.2
20,392 + Ac3H11_3340 0.89 +0.3
20,392 + Ac3H11_3340 0.89 +0.4
20,392 + Ac3H11_3340 0.89 -1.3
20,392 + Ac3H11_3340 0.89 +1.0
20,392 + Ac3H11_3340 0.89 -0.4
20,392 + Ac3H11_3340 0.89 -0.7
20,392 + Ac3H11_3340 0.89 -0.5
20,392 + Ac3H11_3340 0.89 -0.3
20,392 + Ac3H11_3340 0.89 +0.9
20,392 + Ac3H11_3340 0.89 +0.2
20,392 + Ac3H11_3340 0.89 -0.3
20,392 + Ac3H11_3340 0.89 +0.2
20,393 - Ac3H11_3340 0.89 +0.6
20,393 - Ac3H11_3340 0.89 -0.4
20,393 - Ac3H11_3340 0.89 -0.3
20,393 - Ac3H11_3340 0.89 -0.7
20,393 - Ac3H11_3340 0.89 -0.2
20,393 - Ac3H11_3340 0.89 -0.7
20,393 - Ac3H11_3340 0.89 +0.1
20,393 - Ac3H11_3340 0.89 +1.0
20,393 - Ac3H11_3340 0.89 +0.3
20,393 - Ac3H11_3340 0.89 +0.4
20,393 - Ac3H11_3340 0.89 +0.2
20,393 - Ac3H11_3340 0.89 -0.0
20,393 - Ac3H11_3340 0.89 -1.2
20,393 - Ac3H11_3340 0.89 -0.1
20,393 - Ac3H11_3340 0.89 +0.5
20,393 - Ac3H11_3340 0.89 +1.2
20,393 - Ac3H11_3340 0.89 -0.3
20,393 - Ac3H11_3340 0.89 +0.9
20,393 - Ac3H11_3340 0.89 +0.5
20,393 - Ac3H11_3340 0.89 -1.6
20,393 - Ac3H11_3340 0.89 +0.1
20,393 - Ac3H11_3340 0.89 -0.5
20,393 - Ac3H11_3340 0.89 -0.4
20,585 - Ac3H11_3341 0.13 -0.8
20,592 + Ac3H11_3341 0.14 -1.0
20,593 - Ac3H11_3341 0.14 -2.6
20,593 - Ac3H11_3341 0.14 -2.2
20,593 - Ac3H11_3341 0.14 -1.2
20,951 - Ac3H11_3341 0.65 +2.0
20,951 - Ac3H11_3341 0.65 -0.8
21,216 - +0.4
21,297 + Ac3H11_3342 0.11 -1.1
21,297 + Ac3H11_3342 0.11 -0.2
21,297 + Ac3H11_3342 0.11 +0.4
21,297 + Ac3H11_3342 0.11 -0.1
21,297 + Ac3H11_3342 0.11 -1.4
21,298 - Ac3H11_3342 0.12 -0.2
21,298 - Ac3H11_3342 0.12 -2.6
21,298 - Ac3H11_3342 0.12 +0.5
21,298 - Ac3H11_3342 0.12 -0.0
21,298 - Ac3H11_3342 0.12 +0.3
21,401 - Ac3H11_3342 0.24 -0.2
21,401 - Ac3H11_3342 0.24 +0.4
21,410 + Ac3H11_3342 0.25 -0.4
21,410 + Ac3H11_3342 0.25 -0.7
21,411 - Ac3H11_3342 0.26 +0.2
21,411 - Ac3H11_3342 0.26 +0.1
21,411 - Ac3H11_3342 0.26 -0.1
21,418 + Ac3H11_3342 0.26 -0.3
21,418 + Ac3H11_3342 0.26 +0.1
21,418 + Ac3H11_3342 0.26 -0.3
21,418 + Ac3H11_3342 0.26 +1.4
21,418 + Ac3H11_3342 0.26 +0.4
21,418 + Ac3H11_3342 0.26 -0.2
21,418 + Ac3H11_3342 0.26 -0.2
21,418 + Ac3H11_3342 0.26 +0.2
21,419 - Ac3H11_3342 0.27 +0.1
21,419 - Ac3H11_3342 0.27 +0.3
21,419 - Ac3H11_3342 0.27 +0.0
21,443 + Ac3H11_3342 0.30 +0.2
21,444 - Ac3H11_3342 0.30 +0.9
21,444 - Ac3H11_3342 0.30 +0.4
21,446 + Ac3H11_3342 0.30 +0.2
21,446 + Ac3H11_3342 0.30 +0.2
21,446 + Ac3H11_3342 0.30 -2.8
21,447 - Ac3H11_3342 0.30 +0.6
21,447 - Ac3H11_3342 0.30 +0.8
21,487 + Ac3H11_3342 0.35 +0.2
21,487 + Ac3H11_3342 0.35 +1.2
21,487 + Ac3H11_3342 0.35 +0.8
21,487 + Ac3H11_3342 0.35 +0.2
21,487 + Ac3H11_3342 0.35 +0.7
21,488 - Ac3H11_3342 0.35 +0.3
21,488 - Ac3H11_3342 0.35 +0.8
21,488 - Ac3H11_3342 0.35 +0.6
21,488 - Ac3H11_3342 0.35 -0.8
21,488 - Ac3H11_3342 0.35 +0.6
21,541 + Ac3H11_3342 0.42 +0.0
21,542 - Ac3H11_3342 0.42 +0.5
21,542 - Ac3H11_3342 0.42 -1.9
21,800 - Ac3H11_3342 0.74 +0.1
21,810 - Ac3H11_3342 0.75 -1.3
21,835 + Ac3H11_3342 0.78 +0.2
21,835 + Ac3H11_3342 0.78 +0.2
21,835 + Ac3H11_3342 0.78 -0.6
21,835 + Ac3H11_3342 0.78 -0.7
21,836 - Ac3H11_3342 0.78 -0.3
21,836 - Ac3H11_3342 0.78 +0.2
21,836 - Ac3H11_3342 0.78 -0.8
21,836 - Ac3H11_3342 0.78 +0.3
21,865 + Ac3H11_3342 0.82 -0.1
21,865 + Ac3H11_3342 0.82 +0.4
21,865 + Ac3H11_3342 0.82 -0.2
21,865 + Ac3H11_3342 0.82 +0.3
21,866 - Ac3H11_3342 0.82 -0.4
21,866 - Ac3H11_3342 0.82 +0.0
21,895 + Ac3H11_3342 0.86 +0.0
21,895 + Ac3H11_3342 0.86 +0.1
21,895 + Ac3H11_3342 0.86 -0.6
21,896 - Ac3H11_3342 0.86 -0.1
21,896 - Ac3H11_3342 0.86 +0.2
21,946 + +0.7
21,946 + -0.2
21,947 - -0.5
21,947 - +0.6
21,947 - -1.1
21,947 - +0.1
21,947 - -0.1
21,947 - -0.5
21,947 - -0.7
21,947 - -0.1
21,947 - -0.6
21,991 + -0.3
21,992 - -0.4
21,992 - -0.0
21,992 - +0.3
22,004 + +0.1
22,004 + +0.6
22,004 + +0.1
22,005 - +1.5
22,005 - -0.2
22,005 - +0.3
22,005 - -1.7

Or see this region's nucleotide sequence