Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1869

Experiment: LB, pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1868 and Ac3H11_1869 are separated by 49 nucleotidesAc3H11_1869 and Ac3H11_1870 are separated by 102 nucleotidesAc3H11_1870 and Ac3H11_1871 are separated by 22 nucleotides Ac3H11_1868 - Glycyl-tRNA synthetase beta chain (EC 6.1.1.14), at 72,347 to 74,488 _1868 Ac3H11_1869 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-); Histidinol-phosphatase (EC 3.1.3.15), at 74,538 to 75,149 _1869 Ac3H11_1870 - Phospholipid and glycerol acyltransferase (EC 2.3.1.51), at 75,252 to 76,001 _1870 Ac3H11_1871 - Putative predicted metal-dependent hydrolase, at 76,024 to 76,983 _1871 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 74.501 kb on + strandat 74.501 kb on + strandat 74.502 kb on - strandat 74.502 kb on - strandat 74.502 kb on - strandat 74.502 kb on - strandat 74.537 kb on + strandat 74.537 kb on + strandat 74.537 kb on + strandat 74.538 kb on - strandat 74.538 kb on - strandat 74.800 kb on - strand, within Ac3H11_1869at 75.017 kb on - strand, within Ac3H11_1869at 75.017 kb on - strand, within Ac3H11_1869at 75.200 kb on + strandat 75.999 kb on + strandat 75.999 kb on + strandat 75.999 kb on + strandat 75.999 kb on + strandat 75.999 kb on + strandat 75.999 kb on + strandat 76.000 kb on - strandat 76.000 kb on - strandat 76.000 kb on - strandat 76.000 kb on - strandat 76.000 kb on - strandat 76.104 kb on + strandat 76.148 kb on + strand, within Ac3H11_1871at 76.149 kb on - strand, within Ac3H11_1871

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH9
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74,501 + +0.0
74,501 + +0.6
74,502 - -0.2
74,502 - -0.6
74,502 - +1.3
74,502 - -0.4
74,537 + -0.7
74,537 + -1.0
74,537 + -1.8
74,538 - +0.3
74,538 - -0.5
74,800 - Ac3H11_1869 0.43 -1.7
75,017 - Ac3H11_1869 0.78 +1.9
75,017 - Ac3H11_1869 0.78 +1.0
75,200 + +0.3
75,999 + +1.2
75,999 + +0.8
75,999 + +0.1
75,999 + +0.3
75,999 + -0.1
75,999 + -0.2
76,000 - -1.1
76,000 - -0.1
76,000 - +0.9
76,000 - -1.4
76,000 - +0.1
76,104 + +0.3
76,148 + Ac3H11_1871 0.13 +0.5
76,149 - Ac3H11_1871 0.13 -0.0

Or see this region's nucleotide sequence