Experiment: Nickel (II) chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2261 and Shewana3_2262 are separated by 273 nucleotides Shewana3_2262 and Shewana3_2263 are separated by 121 nucleotides Shewana3_2263 and Shewana3_2264 are separated by 90 nucleotides
Shewana3_2261: Shewana3_2261 - hypothetical protein (RefSeq), at 2,722,468 to 2,723,460
_2261
Shewana3_2262: Shewana3_2262 - glutathione S-transferase domain-containing protein (RefSeq), at 2,723,734 to 2,724,405
_2262
Shewana3_2263: Shewana3_2263 - hypothetical protein (RefSeq), at 2,724,527 to 2,724,751
_2263
Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599
_2264
Position (kb)
2723
2724
2725 Strain fitness (log2 ratio)
-1
0
1
2 at 2723.113 kb on - strand, within Shewana3_2261 at 2723.513 kb on - strand at 2723.521 kb on + strand at 2723.732 kb on - strand at 2723.739 kb on - strand at 2723.757 kb on - strand at 2723.873 kb on + strand, within Shewana3_2262 at 2723.895 kb on - strand, within Shewana3_2262 at 2723.938 kb on - strand, within Shewana3_2262 at 2724.178 kb on - strand, within Shewana3_2262 at 2724.198 kb on - strand, within Shewana3_2262 at 2724.220 kb on + strand, within Shewana3_2262 at 2724.584 kb on + strand, within Shewana3_2263 at 2724.599 kb on - strand, within Shewana3_2263 at 2724.622 kb on + strand, within Shewana3_2263 at 2724.640 kb on + strand, within Shewana3_2263 at 2724.973 kb on - strand at 2724.973 kb on - strand at 2725.220 kb on + strand, within Shewana3_2264 at 2725.228 kb on - strand, within Shewana3_2264 at 2725.337 kb on + strand, within Shewana3_2264
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM remove 2,723,113 - Shewana3_2261 0.65 +0.1 2,723,513 - +0.6 2,723,521 + +0.8 2,723,732 - -0.2 2,723,739 - +0.8 2,723,757 - +1.8 2,723,873 + Shewana3_2262 0.21 +0.2 2,723,895 - Shewana3_2262 0.24 +0.8 2,723,938 - Shewana3_2262 0.30 +0.8 2,724,178 - Shewana3_2262 0.66 +0.8 2,724,198 - Shewana3_2262 0.69 -1.2 2,724,220 + Shewana3_2262 0.72 +0.1 2,724,584 + Shewana3_2263 0.25 -1.2 2,724,599 - Shewana3_2263 0.32 +0.8 2,724,622 + Shewana3_2263 0.42 +1.8 2,724,640 + Shewana3_2263 0.50 +0.3 2,724,973 - +0.4 2,724,973 - -0.3 2,725,220 + Shewana3_2264 0.22 +0.8 2,725,228 - Shewana3_2264 0.22 -0.6 2,725,337 + Shewana3_2264 0.28 +0.8
Or see this region's nucleotide sequence