Experiment: Nickel (II) chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0745 and Shewana3_0746 are separated by 157 nucleotides Shewana3_0746 and Shewana3_0747 are separated by 3 nucleotides Shewana3_0747 and Shewana3_0748 are separated by 114 nucleotides Shewana3_0748 and Shewana3_0749 are separated by 24 nucleotides
Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460
_0745
Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445
_0746
Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389
_0747
Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031
_0748
Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490
_0749
Position (kb)
866
867
868
869 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 865.510 kb on - strand at 865.530 kb on - strand at 865.629 kb on + strand at 865.655 kb on - strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.763 kb on - strand, within Shewana3_0746 at 865.780 kb on - strand, within Shewana3_0746 at 865.785 kb on - strand, within Shewana3_0746 at 865.813 kb on - strand, within Shewana3_0746 at 865.878 kb on + strand, within Shewana3_0746 at 865.886 kb on - strand, within Shewana3_0746 at 865.919 kb on - strand, within Shewana3_0746 at 866.325 kb on - strand, within Shewana3_0746 at 866.690 kb on + strand, within Shewana3_0747 at 866.767 kb on + strand, within Shewana3_0747 at 866.767 kb on + strand, within Shewana3_0747 at 866.775 kb on - strand, within Shewana3_0747 at 866.779 kb on + strand, within Shewana3_0747 at 866.966 kb on - strand, within Shewana3_0747 at 867.015 kb on - strand, within Shewana3_0747 at 867.196 kb on + strand, within Shewana3_0747 at 867.429 kb on - strand, within Shewana3_0747 at 867.457 kb on + strand, within Shewana3_0747 at 867.486 kb on + strand, within Shewana3_0747 at 867.752 kb on - strand, within Shewana3_0747 at 867.952 kb on + strand, within Shewana3_0747 at 868.029 kb on + strand, within Shewana3_0747 at 868.043 kb on - strand, within Shewana3_0747 at 868.152 kb on + strand, within Shewana3_0747 at 868.160 kb on - strand, within Shewana3_0747 at 868.230 kb on - strand at 868.325 kb on + strand at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.689 kb on - strand, within Shewana3_0748 at 868.707 kb on + strand, within Shewana3_0748 at 868.792 kb on - strand, within Shewana3_0748 at 868.956 kb on + strand, within Shewana3_0748 at 868.981 kb on + strand at 869.079 kb on - strand at 869.162 kb on - strand, within Shewana3_0749
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM remove 865,510 - -0.1 865,530 - -0.3 865,629 + +1.1 865,655 - +0.9 865,672 + +0.1 865,672 + -0.7 865,672 + -0.5 865,763 - Shewana3_0746 0.18 +0.9 865,780 - Shewana3_0746 0.20 -1.0 865,785 - Shewana3_0746 0.20 +0.1 865,813 - Shewana3_0746 0.24 -0.1 865,878 + Shewana3_0746 0.31 +0.9 865,886 - Shewana3_0746 0.32 -0.7 865,919 - Shewana3_0746 0.36 +0.9 866,325 - Shewana3_0746 0.85 -0.7 866,690 + Shewana3_0747 0.12 +0.9 866,767 + Shewana3_0747 0.16 +1.9 866,767 + Shewana3_0747 0.16 +0.1 866,775 - Shewana3_0747 0.17 -0.5 866,779 + Shewana3_0747 0.17 +1.9 866,966 - Shewana3_0747 0.27 +0.9 867,015 - Shewana3_0747 0.29 +0.9 867,196 + Shewana3_0747 0.38 -0.7 867,429 - Shewana3_0747 0.50 -1.8 867,457 + Shewana3_0747 0.52 -2.0 867,486 + Shewana3_0747 0.53 -1.0 867,752 - Shewana3_0747 0.67 +0.9 867,952 + Shewana3_0747 0.77 -0.6 868,029 + Shewana3_0747 0.81 +1.9 868,043 - Shewana3_0747 0.82 +0.3 868,152 + Shewana3_0747 0.88 -1.3 868,160 - Shewana3_0747 0.88 +0.9 868,230 - -0.7 868,325 + -0.9 868,627 + Shewana3_0748 0.23 -0.7 868,627 + Shewana3_0748 0.23 -0.0 868,627 + Shewana3_0748 0.23 +0.1 868,689 - Shewana3_0748 0.35 +0.1 868,707 + Shewana3_0748 0.38 -0.7 868,792 - Shewana3_0748 0.55 +0.9 868,956 + Shewana3_0748 0.86 +0.2 868,981 + -0.4 869,079 - +0.9 869,162 - Shewana3_0749 0.24 +0.9
Or see this region's nucleotide sequence