Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4368

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4367 and Shewana3_4368 are separated by 205 nucleotidesShewana3_4368 and Shewana3_4369 are separated by 112 nucleotidesShewana3_4369 and Shewana3_4370 are separated by 189 nucleotides Shewana3_4367: Shewana3_4367 - phage integrase family protein (RefSeq), at 255,706 to 256,713 _4367 Shewana3_4368: Shewana3_4368 - chromosome segregation ATPases-like protein (RefSeq), at 256,919 to 257,974 _4368 Shewana3_4369: Shewana3_4369 - hypothetical protein (RefSeq), at 258,087 to 258,452 _4369 Shewana3_4370: Shewana3_4370 - hypothetical protein (RefSeq), at 258,642 to 259,220 _4370 Position (kb) 256 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1at 256.105 kb on - strand, within Shewana3_4367at 256.141 kb on - strand, within Shewana3_4367at 256.191 kb on + strand, within Shewana3_4367at 256.339 kb on - strand, within Shewana3_4367at 256.351 kb on - strand, within Shewana3_4367at 256.421 kb on + strand, within Shewana3_4367at 256.485 kb on - strand, within Shewana3_4367at 256.485 kb on - strand, within Shewana3_4367at 256.581 kb on - strand, within Shewana3_4367at 256.634 kb on + strandat 256.949 kb on - strandat 257.076 kb on + strand, within Shewana3_4368at 257.344 kb on + strand, within Shewana3_4368at 257.471 kb on - strand, within Shewana3_4368at 258.148 kb on + strand, within Shewana3_4369at 258.200 kb on + strand, within Shewana3_4369at 258.206 kb on - strand, within Shewana3_4369at 258.208 kb on - strand, within Shewana3_4369at 258.208 kb on - strand, within Shewana3_4369at 258.208 kb on - strand, within Shewana3_4369at 258.217 kb on + strand, within Shewana3_4369at 258.228 kb on - strand, within Shewana3_4369at 258.269 kb on + strand, within Shewana3_4369at 258.385 kb on + strand, within Shewana3_4369at 258.396 kb on + strand, within Shewana3_4369at 258.421 kb on + strandat 258.421 kb on + strandat 258.456 kb on + strandat 258.483 kb on + strandat 258.483 kb on + strandat 258.491 kb on - strandat 258.497 kb on + strandat 258.543 kb on - strandat 258.590 kb on + strandat 258.603 kb on - strandat 258.607 kb on - strandat 258.640 kb on + strandat 258.640 kb on + strandat 258.640 kb on + strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.648 kb on - strandat 258.653 kb on - strandat 258.664 kb on + strandat 258.671 kb on + strandat 258.671 kb on + strandat 258.671 kb on + strandat 258.671 kb on + strandat 258.672 kb on - strandat 258.679 kb on - strandat 258.679 kb on - strandat 258.679 kb on - strandat 258.679 kb on - strandat 258.679 kb on - strandat 258.679 kb on - strandat 258.679 kb on - strandat 258.680 kb on - strandat 258.702 kb on + strandat 258.703 kb on - strand, within Shewana3_4370at 258.703 kb on - strand, within Shewana3_4370at 258.703 kb on - strand, within Shewana3_4370at 258.764 kb on + strand, within Shewana3_4370at 258.784 kb on - strand, within Shewana3_4370at 258.784 kb on - strand, within Shewana3_4370at 258.872 kb on - strand, within Shewana3_4370at 258.929 kb on - strand, within Shewana3_4370at 258.929 kb on - strand, within Shewana3_4370at 258.929 kb on - strand, within Shewana3_4370

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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256,105 - Shewana3_4367 0.40 +0.4
256,141 - Shewana3_4367 0.43 +0.2
256,191 + Shewana3_4367 0.48 +0.3
256,339 - Shewana3_4367 0.63 -0.1
256,351 - Shewana3_4367 0.64 +0.3
256,421 + Shewana3_4367 0.71 -0.3
256,485 - Shewana3_4367 0.77 +0.0
256,485 - Shewana3_4367 0.77 +0.0
256,581 - Shewana3_4367 0.87 -0.2
256,634 + -0.1
256,949 - -0.2
257,076 + Shewana3_4368 0.15 -0.7
257,344 + Shewana3_4368 0.40 -1.3
257,471 - Shewana3_4368 0.52 -0.5
258,148 + Shewana3_4369 0.17 -0.4
258,200 + Shewana3_4369 0.31 -0.4
258,206 - Shewana3_4369 0.33 -0.8
258,208 - Shewana3_4369 0.33 +1.6
258,208 - Shewana3_4369 0.33 +0.8
258,208 - Shewana3_4369 0.33 +0.8
258,217 + Shewana3_4369 0.36 +1.1
258,228 - Shewana3_4369 0.39 -0.1
258,269 + Shewana3_4369 0.50 -0.5
258,385 + Shewana3_4369 0.81 -0.8
258,396 + Shewana3_4369 0.84 +0.8
258,421 + +0.1
258,421 + +0.4
258,456 + +0.2
258,483 + -0.1
258,483 + -0.1
258,491 - +0.8
258,497 + +0.3
258,543 - -0.4
258,590 + +0.8
258,603 - -1.0
258,607 - -0.6
258,640 + +0.8
258,640 + +0.8
258,640 + -1.5
258,648 - +0.1
258,648 - +0.9
258,648 - -0.2
258,648 - +0.3
258,648 - -0.3
258,648 - -0.4
258,648 - -1.5
258,648 - +0.4
258,648 - -0.8
258,648 - +0.6
258,648 - -0.0
258,648 - -0.6
258,648 - -1.8
258,653 - -0.2
258,664 + +0.1
258,671 + +0.8
258,671 + -0.4
258,671 + +0.8
258,671 + +0.8
258,672 - +1.4
258,679 - -0.6
258,679 - +0.3
258,679 - -0.2
258,679 - -3.7
258,679 - -1.2
258,679 - -0.3
258,679 - -0.2
258,680 - -0.1
258,702 + +0.8
258,703 - Shewana3_4370 0.11 +0.8
258,703 - Shewana3_4370 0.11 +0.6
258,703 - Shewana3_4370 0.11 -1.0
258,764 + Shewana3_4370 0.21 +0.8
258,784 - Shewana3_4370 0.25 +0.8
258,784 - Shewana3_4370 0.25 +0.1
258,872 - Shewana3_4370 0.40 +0.1
258,929 - Shewana3_4370 0.50 +0.8
258,929 - Shewana3_4370 0.50 -0.1
258,929 - Shewana3_4370 0.50 -0.6

Or see this region's nucleotide sequence