Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4168

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4167 and Shewana3_4168 are separated by 343 nucleotidesShewana3_4168 and Shewana3_4169 are separated by 143 nucleotides Shewana3_4167: Shewana3_4167 - DNA replication terminus site-binding protein (RefSeq), at 32,102 to 32,974 _4167 Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007 _4168 Shewana3_4169: Shewana3_4169 - hypothetical protein (RefSeq), at 34,151 to 35,299 _4169 Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 32.337 kb on + strand, within Shewana3_4167at 32.597 kb on - strand, within Shewana3_4167at 32.693 kb on - strand, within Shewana3_4167at 32.863 kb on + strand, within Shewana3_4167at 32.879 kb on + strand, within Shewana3_4167at 33.053 kb on + strandat 33.075 kb on - strandat 33.075 kb on - strandat 33.111 kb on + strandat 33.119 kb on - strandat 33.250 kb on + strandat 33.281 kb on - strandat 33.525 kb on - strand, within Shewana3_4168at 33.566 kb on + strand, within Shewana3_4168at 33.726 kb on + strand, within Shewana3_4168at 33.734 kb on - strand, within Shewana3_4168at 33.793 kb on - strand, within Shewana3_4168at 33.819 kb on + strand, within Shewana3_4168at 34.002 kb on + strandat 34.100 kb on + strandat 34.240 kb on + strandat 34.240 kb on + strandat 34.249 kb on + strandat 34.509 kb on - strand, within Shewana3_4169at 34.511 kb on + strand, within Shewana3_4169at 34.729 kb on - strand, within Shewana3_4169at 34.991 kb on + strand, within Shewana3_4169

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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32,337 + Shewana3_4167 0.27 -0.7
32,597 - Shewana3_4167 0.57 -0.0
32,693 - Shewana3_4167 0.68 +0.1
32,863 + Shewana3_4167 0.87 -1.5
32,879 + Shewana3_4167 0.89 -0.2
33,053 + +0.8
33,075 - -1.8
33,075 - +0.2
33,111 + +0.8
33,119 - +0.2
33,250 + -2.4
33,281 - -1.5
33,525 - Shewana3_4168 0.30 -0.5
33,566 + Shewana3_4168 0.36 +0.8
33,726 + Shewana3_4168 0.59 -3.9
33,734 - Shewana3_4168 0.60 +0.1
33,793 - Shewana3_4168 0.69 -0.8
33,819 + Shewana3_4168 0.73 -0.3
34,002 + -0.1
34,100 + -0.3
34,240 + +0.0
34,240 + -0.2
34,249 + +0.1
34,509 - Shewana3_4169 0.31 -0.8
34,511 + Shewana3_4169 0.31 -0.1
34,729 - Shewana3_4169 0.50 -0.1
34,991 + Shewana3_4169 0.73 +1.1

Or see this region's nucleotide sequence