Experiment: Nickel (II) chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4167 and Shewana3_4168 are separated by 343 nucleotides Shewana3_4168 and Shewana3_4169 are separated by 143 nucleotides
Shewana3_4167: Shewana3_4167 - DNA replication terminus site-binding protein (RefSeq), at 32,102 to 32,974
_4167
Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007
_4168
Shewana3_4169: Shewana3_4169 - hypothetical protein (RefSeq), at 34,151 to 35,299
_4169
Position (kb)
33
34
35 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 32.337 kb on + strand, within Shewana3_4167 at 32.597 kb on - strand, within Shewana3_4167 at 32.693 kb on - strand, within Shewana3_4167 at 32.863 kb on + strand, within Shewana3_4167 at 32.879 kb on + strand, within Shewana3_4167 at 33.053 kb on + strand at 33.075 kb on - strand at 33.075 kb on - strand at 33.111 kb on + strand at 33.119 kb on - strand at 33.250 kb on + strand at 33.281 kb on - strand at 33.525 kb on - strand, within Shewana3_4168 at 33.566 kb on + strand, within Shewana3_4168 at 33.726 kb on + strand, within Shewana3_4168 at 33.734 kb on - strand, within Shewana3_4168 at 33.793 kb on - strand, within Shewana3_4168 at 33.819 kb on + strand, within Shewana3_4168 at 34.002 kb on + strand at 34.100 kb on + strand at 34.240 kb on + strand at 34.240 kb on + strand at 34.249 kb on + strand at 34.509 kb on - strand, within Shewana3_4169 at 34.511 kb on + strand, within Shewana3_4169 at 34.729 kb on - strand, within Shewana3_4169 at 34.991 kb on + strand, within Shewana3_4169
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM remove 32,337 + Shewana3_4167 0.27 -0.7 32,597 - Shewana3_4167 0.57 -0.0 32,693 - Shewana3_4167 0.68 +0.1 32,863 + Shewana3_4167 0.87 -1.5 32,879 + Shewana3_4167 0.89 -0.2 33,053 + +0.8 33,075 - -1.8 33,075 - +0.2 33,111 + +0.8 33,119 - +0.2 33,250 + -2.4 33,281 - -1.5 33,525 - Shewana3_4168 0.30 -0.5 33,566 + Shewana3_4168 0.36 +0.8 33,726 + Shewana3_4168 0.59 -3.9 33,734 - Shewana3_4168 0.60 +0.1 33,793 - Shewana3_4168 0.69 -0.8 33,819 + Shewana3_4168 0.73 -0.3 34,002 + -0.1 34,100 + -0.3 34,240 + +0.0 34,240 + -0.2 34,249 + +0.1 34,509 - Shewana3_4169 0.31 -0.8 34,511 + Shewana3_4169 0.31 -0.1 34,729 - Shewana3_4169 0.50 -0.1 34,991 + Shewana3_4169 0.73 +1.1
Or see this region's nucleotide sequence