Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0681

Experiment: Fusidic 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0680 and ispD are separated by 14 nucleotidesispD and Synpcc7942_0682 are separated by 83 nucleotides Synpcc7942_0680: Synpcc7942_0680 - C-5 sterol desaturase, at 674,334 to 675,149 _0680 Synpcc7942_0681: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 675,164 to 675,862 ispD Synpcc7942_0682: Synpcc7942_0682 - hypothetical protein, at 675,946 to 676,905 _0682 Position (kb) 675 676Strain fitness (log2 ratio) -2 -1 0 1 2at 674.184 kb on + strandat 674.535 kb on + strand, within Synpcc7942_0680at 674.537 kb on - strand, within Synpcc7942_0680at 674.610 kb on - strand, within Synpcc7942_0680at 674.771 kb on - strand, within Synpcc7942_0680at 674.792 kb on - strand, within Synpcc7942_0680at 674.801 kb on + strand, within Synpcc7942_0680at 674.886 kb on - strand, within Synpcc7942_0680at 674.886 kb on - strand, within Synpcc7942_0680at 674.922 kb on - strand, within Synpcc7942_0680at 674.923 kb on + strand, within Synpcc7942_0680at 674.924 kb on - strand, within Synpcc7942_0680at 674.959 kb on - strand, within Synpcc7942_0680at 674.960 kb on - strand, within Synpcc7942_0680at 674.975 kb on + strand, within Synpcc7942_0680at 675.004 kb on - strand, within Synpcc7942_0680at 675.119 kb on + strandat 675.152 kb on - strandat 675.164 kb on - strandat 675.191 kb on - strandat 675.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.015625 mg/ml
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674,184 + -1.3
674,535 + Synpcc7942_0680 0.25 -2.7
674,537 - Synpcc7942_0680 0.25 +0.3
674,610 - Synpcc7942_0680 0.34 +1.2
674,771 - Synpcc7942_0680 0.54 -0.6
674,792 - Synpcc7942_0680 0.56 -0.4
674,801 + Synpcc7942_0680 0.57 -2.4
674,886 - Synpcc7942_0680 0.68 +0.3
674,886 - Synpcc7942_0680 0.68 -1.3
674,922 - Synpcc7942_0680 0.72 +0.6
674,923 + Synpcc7942_0680 0.72 -1.3
674,924 - Synpcc7942_0680 0.72 -0.8
674,959 - Synpcc7942_0680 0.77 +1.3
674,960 - Synpcc7942_0680 0.77 -1.8
674,975 + Synpcc7942_0680 0.79 +1.9
675,004 - Synpcc7942_0680 0.82 +0.4
675,119 + +0.9
675,152 - +1.9
675,164 - +0.3
675,191 - +0.4
675,948 - +1.8

Or see this region's nucleotide sequence