Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5982 and Pf1N1B4_5983 are separated by 23 nucleotides Pf1N1B4_5983 and Pf1N1B4_5984 are separated by 37 nucleotides
Pf1N1B4_5982 - Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-), at 430,674 to 432,317
_5982
Pf1N1B4_5983 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 432,341 to 434,089
_5983
Pf1N1B4_5984 - FIG005548: transport protein, at 434,127 to 436,643
_5984
Position (kb) 432
433
434
435 Strain fitness (log2 ratio) -2
-1
0
1
2 at 431.345 kb on + strand, within Pf1N1B4_5982 at 431.372 kb on + strand, within Pf1N1B4_5982 at 431.376 kb on + strand, within Pf1N1B4_5982 at 431.376 kb on + strand, within Pf1N1B4_5982 at 431.377 kb on - strand, within Pf1N1B4_5982 at 431.377 kb on - strand, within Pf1N1B4_5982 at 431.377 kb on - strand, within Pf1N1B4_5982 at 431.626 kb on + strand at 431.626 kb on + strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.627 kb on - strand, within Pf1N1B4_5982 at 431.723 kb on - strand, within Pf1N1B4_5982 at 431.732 kb on + strand at 431.803 kb on + strand, within Pf1N1B4_5982 at 431.871 kb on + strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.872 kb on - strand, within Pf1N1B4_5982 at 431.894 kb on - strand, within Pf1N1B4_5982 at 432.181 kb on + strand at 432.182 kb on - strand at 432.277 kb on + strand at 432.301 kb on - strand at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.523 kb on - strand, within Pf1N1B4_5983 at 432.529 kb on - strand at 432.798 kb on + strand at 432.798 kb on + strand, within Pf1N1B4_5983 at 432.798 kb on + strand at 432.824 kb on + strand, within Pf1N1B4_5983 at 432.990 kb on + strand, within Pf1N1B4_5983 at 432.991 kb on - strand, within Pf1N1B4_5983 at 433.080 kb on - strand, within Pf1N1B4_5983 at 433.236 kb on + strand at 433.236 kb on + strand, within Pf1N1B4_5983 at 433.653 kb on + strand, within Pf1N1B4_5983 at 433.653 kb on + strand, within Pf1N1B4_5983 at 433.653 kb on + strand, within Pf1N1B4_5983 at 433.654 kb on - strand, within Pf1N1B4_5983 at 433.669 kb on - strand, within Pf1N1B4_5983 at 433.669 kb on - strand, within Pf1N1B4_5983 at 434.109 kb on + strand at 434.128 kb on + strand at 434.471 kb on - strand, within Pf1N1B4_5984 at 434.471 kb on - strand at 434.480 kb on - strand, within Pf1N1B4_5984 at 434.659 kb on + strand, within Pf1N1B4_5984 at 434.660 kb on - strand, within Pf1N1B4_5984 at 434.965 kb on + strand, within Pf1N1B4_5984 at 434.965 kb on + strand, within Pf1N1B4_5984 at 434.965 kb on + strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 434.966 kb on - strand, within Pf1N1B4_5984 at 435.076 kb on + strand, within Pf1N1B4_5984 at 435.077 kb on - strand, within Pf1N1B4_5984
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 431,345 + Pf1N1B4_5982 0.41 -1.4 431,372 + Pf1N1B4_5982 0.42 -1.0 431,376 + Pf1N1B4_5982 0.43 -0.4 431,376 + Pf1N1B4_5982 0.43 -1.4 431,377 - Pf1N1B4_5982 0.43 +1.2 431,377 - Pf1N1B4_5982 0.43 -0.1 431,377 - Pf1N1B4_5982 0.43 -0.5 431,626 + -1.4 431,626 + Pf1N1B4_5982 0.58 -1.4 431,627 - Pf1N1B4_5982 0.58 +1.2 431,627 - Pf1N1B4_5982 0.58 -0.9 431,627 - Pf1N1B4_5982 0.58 -2.4 431,627 - Pf1N1B4_5982 0.58 -0.2 431,723 - Pf1N1B4_5982 0.64 +0.3 431,732 + -0.4 431,803 + Pf1N1B4_5982 0.69 +0.2 431,871 + Pf1N1B4_5982 0.73 +0.3 431,872 - Pf1N1B4_5982 0.73 +1.6 431,872 - Pf1N1B4_5982 0.73 -1.0 431,872 - Pf1N1B4_5982 0.73 -0.4 431,872 - Pf1N1B4_5982 0.73 +1.0 431,894 - Pf1N1B4_5982 0.74 -2.4 432,181 + +0.1 432,182 - -2.7 432,277 + -0.2 432,301 - -1.4 432,523 - Pf1N1B4_5983 0.10 +1.0 432,523 - Pf1N1B4_5983 0.10 +0.3 432,523 - Pf1N1B4_5983 0.10 +1.4 432,523 - Pf1N1B4_5983 0.10 -2.0 432,529 - +1.6 432,798 + -0.4 432,798 + Pf1N1B4_5983 0.26 +1.2 432,798 + -1.4 432,824 + Pf1N1B4_5983 0.28 -0.4 432,990 + Pf1N1B4_5983 0.37 +0.6 432,991 - Pf1N1B4_5983 0.37 -0.1 433,080 - Pf1N1B4_5983 0.42 +0.3 433,236 + +1.2 433,236 + Pf1N1B4_5983 0.51 +1.2 433,653 + Pf1N1B4_5983 0.75 +2.4 433,653 + Pf1N1B4_5983 0.75 -0.8 433,653 + Pf1N1B4_5983 0.75 +0.0 433,654 - Pf1N1B4_5983 0.75 +1.1 433,669 - Pf1N1B4_5983 0.76 -0.4 433,669 - Pf1N1B4_5983 0.76 +2.2 434,109 + +0.1 434,128 + +0.2 434,471 - Pf1N1B4_5984 0.14 +0.3 434,471 - -1.4 434,480 - Pf1N1B4_5984 0.14 +2.2 434,659 + Pf1N1B4_5984 0.21 +2.4 434,660 - Pf1N1B4_5984 0.21 -1.4 434,965 + Pf1N1B4_5984 0.33 +2.2 434,965 + Pf1N1B4_5984 0.33 +1.2 434,965 + Pf1N1B4_5984 0.33 +0.2 434,966 - Pf1N1B4_5984 0.33 +0.2 434,966 - Pf1N1B4_5984 0.33 +0.3 434,966 - Pf1N1B4_5984 0.33 -0.4 434,966 - Pf1N1B4_5984 0.33 -0.4 435,076 + Pf1N1B4_5984 0.38 +0.2 435,077 - Pf1N1B4_5984 0.38 -0.4
Or see this region's nucleotide sequence