Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1206

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1205 and Pf1N1B4_1206 overlap by 36 nucleotidesPf1N1B4_1206 and Pf1N1B4_1207 are separated by 13 nucleotidesPf1N1B4_1207 and Pf1N1B4_1208 are separated by 72 nucleotides Pf1N1B4_1205 - Sulfate permease, at 1,369,035 to 1,370,420 _1205 Pf1N1B4_1206 - hypothetical protein, at 1,370,385 to 1,370,672 _1206 Pf1N1B4_1207 - Transcriptional regulator, LysR family, at 1,370,686 to 1,371,597 _1207 Pf1N1B4_1208 - Modulator of drug activity B, at 1,371,670 to 1,372,260 _1208 Position (kb) 1370 1371Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1369.406 kb on + strand, within Pf1N1B4_1205at 1369.580 kb on + strand, within Pf1N1B4_1205at 1369.581 kb on - strand, within Pf1N1B4_1205at 1369.581 kb on - strand, within Pf1N1B4_1205at 1369.814 kb on - strand, within Pf1N1B4_1205at 1369.814 kb on - strand, within Pf1N1B4_1205at 1370.047 kb on + strand, within Pf1N1B4_1205at 1370.047 kb on + strand, within Pf1N1B4_1205at 1370.047 kb on + strand, within Pf1N1B4_1205at 1370.047 kb on + strand, within Pf1N1B4_1205at 1370.047 kb on + strand, within Pf1N1B4_1205at 1370.047 kb on + strand, within Pf1N1B4_1205at 1370.048 kb on - strand, within Pf1N1B4_1205at 1370.048 kb on - strandat 1370.239 kb on + strand, within Pf1N1B4_1205at 1370.239 kb on + strand, within Pf1N1B4_1205at 1370.239 kb on + strand, within Pf1N1B4_1205at 1370.239 kb on + strand, within Pf1N1B4_1205at 1370.240 kb on - strand, within Pf1N1B4_1205at 1370.240 kb on - strand, within Pf1N1B4_1205at 1370.240 kb on - strand, within Pf1N1B4_1205at 1370.240 kb on - strand, within Pf1N1B4_1205at 1370.362 kb on + strandat 1370.362 kb on + strandat 1370.363 kb on - strandat 1370.486 kb on - strand, within Pf1N1B4_1206at 1370.490 kb on - strand, within Pf1N1B4_1206at 1370.712 kb on - strandat 1370.784 kb on - strand, within Pf1N1B4_1207at 1370.784 kb on - strand, within Pf1N1B4_1207at 1370.784 kb on - strand, within Pf1N1B4_1207at 1370.981 kb on + strand, within Pf1N1B4_1207at 1370.981 kb on + strand, within Pf1N1B4_1207at 1370.982 kb on - strandat 1371.083 kb on + strand, within Pf1N1B4_1207at 1371.084 kb on - strand, within Pf1N1B4_1207at 1371.266 kb on + strand, within Pf1N1B4_1207at 1371.266 kb on + strand, within Pf1N1B4_1207at 1371.267 kb on - strand, within Pf1N1B4_1207at 1371.404 kb on + strand, within Pf1N1B4_1207at 1371.404 kb on + strand, within Pf1N1B4_1207at 1371.404 kb on + strand, within Pf1N1B4_1207at 1371.405 kb on - strand, within Pf1N1B4_1207at 1371.405 kb on - strand, within Pf1N1B4_1207at 1371.405 kb on - strand, within Pf1N1B4_1207at 1371.655 kb on + strandat 1371.655 kb on + strandat 1371.655 kb on + strandat 1371.655 kb on + strandat 1371.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,369,406 + Pf1N1B4_1205 0.27 -0.2
1,369,580 + Pf1N1B4_1205 0.39 -1.1
1,369,581 - Pf1N1B4_1205 0.39 -0.2
1,369,581 - Pf1N1B4_1205 0.39 +0.3
1,369,814 - Pf1N1B4_1205 0.56 +2.0
1,369,814 - Pf1N1B4_1205 0.56 +2.5
1,370,047 + Pf1N1B4_1205 0.73 -0.8
1,370,047 + Pf1N1B4_1205 0.73 +0.2
1,370,047 + Pf1N1B4_1205 0.73 +1.2
1,370,047 + Pf1N1B4_1205 0.73 -1.4
1,370,047 + Pf1N1B4_1205 0.73 +3.0
1,370,047 + Pf1N1B4_1205 0.73 -0.1
1,370,048 - Pf1N1B4_1205 0.73 +1.2
1,370,048 - +0.2
1,370,239 + Pf1N1B4_1205 0.87 +1.8
1,370,239 + Pf1N1B4_1205 0.87 -1.4
1,370,239 + Pf1N1B4_1205 0.87 +1.5
1,370,239 + Pf1N1B4_1205 0.87 -1.4
1,370,240 - Pf1N1B4_1205 0.87 -0.8
1,370,240 - Pf1N1B4_1205 0.87 +0.0
1,370,240 - Pf1N1B4_1205 0.87 +2.4
1,370,240 - Pf1N1B4_1205 0.87 +0.7
1,370,362 + +0.2
1,370,362 + -0.1
1,370,363 - -0.2
1,370,486 - Pf1N1B4_1206 0.35 +0.2
1,370,490 - Pf1N1B4_1206 0.36 -1.8
1,370,712 - +0.9
1,370,784 - Pf1N1B4_1207 0.11 +1.2
1,370,784 - Pf1N1B4_1207 0.11 -1.0
1,370,784 - Pf1N1B4_1207 0.11 -2.4
1,370,981 + Pf1N1B4_1207 0.32 -1.5
1,370,981 + Pf1N1B4_1207 0.32 +1.8
1,370,982 - +2.2
1,371,083 + Pf1N1B4_1207 0.44 -1.4
1,371,084 - Pf1N1B4_1207 0.44 -0.4
1,371,266 + Pf1N1B4_1207 0.64 +0.8
1,371,266 + Pf1N1B4_1207 0.64 +0.6
1,371,267 - Pf1N1B4_1207 0.64 +1.1
1,371,404 + Pf1N1B4_1207 0.79 +0.6
1,371,404 + Pf1N1B4_1207 0.79 +1.5
1,371,404 + Pf1N1B4_1207 0.79 -0.2
1,371,405 - Pf1N1B4_1207 0.79 +0.2
1,371,405 - Pf1N1B4_1207 0.79 -0.4
1,371,405 - Pf1N1B4_1207 0.79 +0.8
1,371,655 + +0.2
1,371,655 + -0.5
1,371,655 + -0.5
1,371,655 + +0.2
1,371,659 - +0.2

Or see this region's nucleotide sequence