Experiment: Temperature shift 30_to_34
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23095 and PFLU_RS23100 are separated by 711 nucleotides PFLU_RS23100 and PFLU_RS23105 are separated by 102 nucleotides PFLU_RS23105 and PFLU_RS23110 overlap by 4 nucleotides
PFLU_RS23095: PFLU_RS23095 - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 5,186,988 to 5,187,947
_RS23095
PFLU_RS23100: PFLU_RS23100 - ribonuclease E, at 5,188,659 to 5,191,886
_RS23100
PFLU_RS23105: PFLU_RS23105 - nucleotidyltransferase family protein, at 5,191,989 to 5,192,579
_RS23105
PFLU_RS23110: PFLU_RS23110 - XdhC family protein, at 5,192,576 to 5,193,562
_RS23110
Position (kb) 5188
5189
5190
5191
5192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5187.766 kb on + strand, within PFLU_RS23095 at 5187.766 kb on + strand, within PFLU_RS23095 at 5187.767 kb on - strand, within PFLU_RS23095 at 5187.767 kb on - strand, within PFLU_RS23095 at 5187.767 kb on - strand, within PFLU_RS23095 at 5187.767 kb on - strand, within PFLU_RS23095 at 5187.767 kb on - strand, within PFLU_RS23095 at 5187.767 kb on - strand, within PFLU_RS23095 at 5187.809 kb on + strand, within PFLU_RS23095 at 5187.809 kb on + strand, within PFLU_RS23095 at 5187.823 kb on + strand, within PFLU_RS23095 at 5187.823 kb on + strand, within PFLU_RS23095 at 5187.823 kb on + strand, within PFLU_RS23095 at 5187.823 kb on + strand, within PFLU_RS23095 at 5187.823 kb on + strand, within PFLU_RS23095 at 5187.824 kb on - strand, within PFLU_RS23095 at 5187.824 kb on - strand, within PFLU_RS23095 at 5187.889 kb on + strand at 5187.890 kb on - strand at 5187.890 kb on - strand at 5187.890 kb on - strand at 5187.959 kb on + strand at 5187.960 kb on - strand at 5187.987 kb on + strand at 5187.987 kb on + strand at 5187.987 kb on + strand at 5187.987 kb on + strand at 5187.987 kb on + strand at 5188.000 kb on + strand at 5188.000 kb on + strand at 5188.000 kb on + strand at 5188.000 kb on + strand at 5188.000 kb on + strand at 5188.000 kb on + strand at 5188.002 kb on + strand at 5188.002 kb on + strand at 5188.002 kb on + strand at 5188.002 kb on + strand at 5188.096 kb on + strand at 5188.132 kb on + strand at 5188.132 kb on + strand at 5188.132 kb on + strand at 5188.132 kb on + strand at 5188.132 kb on + strand at 5188.171 kb on + strand at 5188.171 kb on + strand at 5188.171 kb on + strand at 5188.171 kb on + strand at 5188.184 kb on + strand at 5188.184 kb on + strand at 5188.184 kb on + strand at 5188.184 kb on + strand at 5188.203 kb on + strand at 5188.203 kb on + strand at 5188.277 kb on + strand at 5188.277 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.310 kb on + strand at 5188.320 kb on + strand at 5188.320 kb on + strand at 5188.320 kb on + strand at 5188.320 kb on + strand at 5188.349 kb on + strand at 5188.356 kb on + strand at 5188.356 kb on + strand at 5188.356 kb on + strand at 5188.356 kb on + strand at 5188.356 kb on + strand at 5190.916 kb on + strand, within PFLU_RS23100 at 5190.916 kb on + strand, within PFLU_RS23100 at 5190.916 kb on + strand, within PFLU_RS23100 at 5190.916 kb on + strand, within PFLU_RS23100 at 5190.917 kb on - strand, within PFLU_RS23100 at 5191.312 kb on + strand, within PFLU_RS23100 at 5191.312 kb on + strand, within PFLU_RS23100 at 5191.312 kb on + strand, within PFLU_RS23100 at 5191.312 kb on + strand, within PFLU_RS23100 at 5191.312 kb on + strand, within PFLU_RS23100 at 5191.313 kb on - strand, within PFLU_RS23100 at 5191.313 kb on - strand, within PFLU_RS23100 at 5191.313 kb on - strand, within PFLU_RS23100 at 5191.387 kb on + strand, within PFLU_RS23100 at 5191.387 kb on + strand, within PFLU_RS23100 at 5191.387 kb on + strand, within PFLU_RS23100 at 5191.387 kb on + strand, within PFLU_RS23100 at 5191.388 kb on - strand, within PFLU_RS23100 at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.606 kb on + strand at 5191.607 kb on - strand at 5191.900 kb on + strand at 5191.900 kb on + strand at 5191.901 kb on - strand at 5191.901 kb on - strand at 5191.936 kb on + strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.937 kb on - strand at 5191.971 kb on + strand at 5191.971 kb on + strand at 5191.984 kb on + strand at 5191.984 kb on + strand at 5191.984 kb on + strand at 5191.984 kb on + strand at 5191.984 kb on + strand at 5191.984 kb on + strand at 5191.985 kb on - strand at 5191.985 kb on - strand at 5191.985 kb on - strand at 5191.985 kb on - strand at 5191.985 kb on - strand at 5191.985 kb on - strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.990 kb on + strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5191.991 kb on - strand at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.058 kb on + strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.059 kb on - strand, within PFLU_RS23105 at 5192.164 kb on + strand, within PFLU_RS23105 at 5192.165 kb on - strand, within PFLU_RS23105 at 5192.165 kb on - strand, within PFLU_RS23105 at 5192.165 kb on - strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.192 kb on + strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.193 kb on - strand, within PFLU_RS23105 at 5192.243 kb on + strand, within PFLU_RS23105 at 5192.253 kb on - strand, within PFLU_RS23105 at 5192.253 kb on - strand, within PFLU_RS23105 at 5192.359 kb on + strand, within PFLU_RS23105 at 5192.359 kb on + strand, within PFLU_RS23105 at 5192.360 kb on - strand, within PFLU_RS23105 at 5192.360 kb on - strand, within PFLU_RS23105 at 5192.360 kb on - strand, within PFLU_RS23105 at 5192.445 kb on + strand, within PFLU_RS23105 at 5192.445 kb on + strand, within PFLU_RS23105 at 5192.445 kb on + strand, within PFLU_RS23105 at 5192.445 kb on + strand, within PFLU_RS23105 at 5192.445 kb on + strand, within PFLU_RS23105 at 5192.446 kb on - strand, within PFLU_RS23105 at 5192.446 kb on - strand, within PFLU_RS23105 at 5192.504 kb on + strand, within PFLU_RS23105 at 5192.504 kb on + strand, within PFLU_RS23105 at 5192.504 kb on + strand, within PFLU_RS23105 at 5192.504 kb on + strand, within PFLU_RS23105 at 5192.504 kb on + strand, within PFLU_RS23105 at 5192.504 kb on + strand, within PFLU_RS23105 at 5192.505 kb on - strand, within PFLU_RS23105 at 5192.505 kb on - strand, within PFLU_RS23105 at 5192.562 kb on + strand at 5192.562 kb on + strand at 5192.690 kb on - strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.802 kb on + strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110 at 5192.803 kb on - strand, within PFLU_RS23110
Per-strain Table
Position Strand Gene LocusTag Fraction Temperature shift 30_to_34 remove 5,187,766 + PFLU_RS23095 0.81 +0.9 5,187,766 + PFLU_RS23095 0.81 -0.2 5,187,767 - PFLU_RS23095 0.81 +0.9 5,187,767 - PFLU_RS23095 0.81 +1.5 5,187,767 - PFLU_RS23095 0.81 +1.5 5,187,767 - PFLU_RS23095 0.81 +1.4 5,187,767 - PFLU_RS23095 0.81 +2.4 5,187,767 - PFLU_RS23095 0.81 +1.4 5,187,809 + PFLU_RS23095 0.86 -1.8 5,187,809 + PFLU_RS23095 0.86 +0.8 5,187,823 + PFLU_RS23095 0.87 +0.1 5,187,823 + PFLU_RS23095 0.87 -1.2 5,187,823 + PFLU_RS23095 0.87 +1.3 5,187,823 + PFLU_RS23095 0.87 -1.7 5,187,823 + PFLU_RS23095 0.87 -1.0 5,187,824 - PFLU_RS23095 0.87 +0.0 5,187,824 - PFLU_RS23095 0.87 -0.8 5,187,889 + +1.3 5,187,890 - +0.2 5,187,890 - +1.3 5,187,890 - +0.7 5,187,959 + +1.0 5,187,960 - +3.5 5,187,987 + +0.4 5,187,987 + +0.1 5,187,987 + +1.2 5,187,987 + +0.1 5,187,987 + +1.3 5,188,000 + +0.9 5,188,000 + -0.1 5,188,000 + +0.0 5,188,000 + +1.6 5,188,000 + +0.4 5,188,000 + +0.6 5,188,002 + -0.2 5,188,002 + +0.6 5,188,002 + -0.6 5,188,002 + +0.3 5,188,096 + +0.7 5,188,132 + +1.9 5,188,132 + +1.1 5,188,132 + +0.3 5,188,132 + +1.4 5,188,132 + -1.0 5,188,171 + +0.3 5,188,171 + -0.2 5,188,171 + -1.0 5,188,171 + -1.0 5,188,184 + -0.8 5,188,184 + -1.0 5,188,184 + -0.5 5,188,184 + -1.5 5,188,203 + +0.3 5,188,203 + +0.2 5,188,277 + -0.2 5,188,277 + -0.5 5,188,310 + +0.0 5,188,310 + -1.5 5,188,310 + -0.4 5,188,310 + +0.1 5,188,310 + -1.2 5,188,310 + +0.2 5,188,310 + -0.1 5,188,310 + +0.2 5,188,310 + +2.1 5,188,310 + +0.7 5,188,310 + +1.2 5,188,310 + +0.4 5,188,310 + +1.2 5,188,310 + +0.9 5,188,310 + +0.7 5,188,310 + +1.3 5,188,310 + +1.3 5,188,310 + +0.1 5,188,310 + -1.8 5,188,310 + +0.6 5,188,310 + +0.3 5,188,310 + +1.3 5,188,310 + +1.1 5,188,310 + +1.0 5,188,320 + -0.2 5,188,320 + +3.7 5,188,320 + +1.5 5,188,320 + +0.5 5,188,349 + -1.4 5,188,356 + +1.2 5,188,356 + -0.8 5,188,356 + -1.5 5,188,356 + +0.3 5,188,356 + -0.1 5,190,916 + PFLU_RS23100 0.70 +1.3 5,190,916 + PFLU_RS23100 0.70 +1.3 5,190,916 + PFLU_RS23100 0.70 +0.3 5,190,916 + PFLU_RS23100 0.70 -1.5 5,190,917 - PFLU_RS23100 0.70 -0.7 5,191,312 + PFLU_RS23100 0.82 -1.5 5,191,312 + PFLU_RS23100 0.82 +1.3 5,191,312 + PFLU_RS23100 0.82 -1.0 5,191,312 + PFLU_RS23100 0.82 -2.2 5,191,312 + PFLU_RS23100 0.82 +0.3 5,191,313 - PFLU_RS23100 0.82 +1.3 5,191,313 - PFLU_RS23100 0.82 -0.5 5,191,313 - PFLU_RS23100 0.82 -1.0 5,191,387 + PFLU_RS23100 0.85 -1.9 5,191,387 + PFLU_RS23100 0.85 -1.1 5,191,387 + PFLU_RS23100 0.85 -1.8 5,191,387 + PFLU_RS23100 0.85 -1.7 5,191,388 - PFLU_RS23100 0.85 -0.7 5,191,606 + -0.7 5,191,606 + +1.3 5,191,606 + -1.2 5,191,606 + -0.4 5,191,606 + -0.8 5,191,606 + -3.5 5,191,606 + -1.1 5,191,606 + -3.2 5,191,607 - +0.3 5,191,900 + +0.8 5,191,900 + -1.8 5,191,901 - +0.3 5,191,901 - +1.1 5,191,936 + +2.0 5,191,937 - +0.3 5,191,937 - -0.2 5,191,937 - +0.6 5,191,971 + -0.2 5,191,971 + -0.2 5,191,984 + -1.5 5,191,984 + -0.2 5,191,984 + +1.3 5,191,984 + +1.5 5,191,984 + +0.2 5,191,984 + -0.8 5,191,985 - -0.8 5,191,985 - -2.3 5,191,985 - -0.7 5,191,985 - -0.5 5,191,985 - +1.2 5,191,985 - -0.6 5,191,990 + -1.2 5,191,990 + +0.1 5,191,990 + +0.2 5,191,990 + +1.3 5,191,990 + +0.3 5,191,990 + +1.5 5,191,990 + +0.0 5,191,990 + -0.8 5,191,990 + +0.9 5,191,990 + +0.0 5,191,990 + +0.1 5,191,990 + +0.9 5,191,990 + -0.3 5,191,990 + +0.8 5,191,990 + -0.2 5,191,990 + +0.9 5,191,991 - +0.9 5,191,991 - +0.7 5,191,991 - +0.8 5,191,991 - +0.3 5,191,991 - -0.0 5,191,991 - +0.6 5,191,991 - -1.1 5,191,991 - -0.5 5,191,991 - +1.3 5,191,991 - -0.3 5,191,991 - -2.4 5,191,991 - +1.0 5,191,991 - -0.2 5,191,991 - +0.2 5,191,991 - +1.2 5,191,991 - -0.4 5,191,991 - -1.3 5,191,991 - -0.7 5,191,991 - +2.1 5,192,058 + PFLU_RS23105 0.12 +0.1 5,192,058 + PFLU_RS23105 0.12 +1.5 5,192,058 + PFLU_RS23105 0.12 -1.8 5,192,058 + PFLU_RS23105 0.12 +0.6 5,192,058 + PFLU_RS23105 0.12 +0.6 5,192,058 + PFLU_RS23105 0.12 +0.3 5,192,058 + PFLU_RS23105 0.12 +0.3 5,192,059 - PFLU_RS23105 0.12 -1.0 5,192,059 - PFLU_RS23105 0.12 +0.8 5,192,059 - PFLU_RS23105 0.12 -0.0 5,192,059 - PFLU_RS23105 0.12 -1.5 5,192,059 - PFLU_RS23105 0.12 +0.1 5,192,059 - PFLU_RS23105 0.12 +0.8 5,192,059 - PFLU_RS23105 0.12 -1.6 5,192,059 - PFLU_RS23105 0.12 +0.1 5,192,059 - PFLU_RS23105 0.12 -0.9 5,192,164 + PFLU_RS23105 0.30 -0.2 5,192,165 - PFLU_RS23105 0.30 +0.7 5,192,165 - PFLU_RS23105 0.30 +0.8 5,192,165 - PFLU_RS23105 0.30 +0.6 5,192,192 + PFLU_RS23105 0.34 +0.2 5,192,192 + PFLU_RS23105 0.34 -0.7 5,192,192 + PFLU_RS23105 0.34 +1.6 5,192,192 + PFLU_RS23105 0.34 -0.7 5,192,192 + PFLU_RS23105 0.34 +0.3 5,192,192 + PFLU_RS23105 0.34 +0.6 5,192,192 + PFLU_RS23105 0.34 -1.5 5,192,193 - PFLU_RS23105 0.35 +0.9 5,192,193 - PFLU_RS23105 0.35 +2.1 5,192,193 - PFLU_RS23105 0.35 -2.2 5,192,193 - PFLU_RS23105 0.35 +0.4 5,192,193 - PFLU_RS23105 0.35 -0.4 5,192,193 - PFLU_RS23105 0.35 +0.8 5,192,193 - PFLU_RS23105 0.35 +0.1 5,192,193 - PFLU_RS23105 0.35 +0.7 5,192,193 - PFLU_RS23105 0.35 -0.1 5,192,193 - PFLU_RS23105 0.35 +0.3 5,192,193 - PFLU_RS23105 0.35 -0.1 5,192,193 - PFLU_RS23105 0.35 -1.2 5,192,193 - PFLU_RS23105 0.35 +1.3 5,192,243 + PFLU_RS23105 0.43 -0.8 5,192,253 - PFLU_RS23105 0.45 +0.1 5,192,253 - PFLU_RS23105 0.45 -1.8 5,192,359 + PFLU_RS23105 0.63 -0.1 5,192,359 + PFLU_RS23105 0.63 -0.9 5,192,360 - PFLU_RS23105 0.63 +1.0 5,192,360 - PFLU_RS23105 0.63 -2.2 5,192,360 - PFLU_RS23105 0.63 +0.9 5,192,445 + PFLU_RS23105 0.77 +0.6 5,192,445 + PFLU_RS23105 0.77 +0.8 5,192,445 + PFLU_RS23105 0.77 +0.7 5,192,445 + PFLU_RS23105 0.77 +1.9 5,192,445 + PFLU_RS23105 0.77 +0.1 5,192,446 - PFLU_RS23105 0.77 +0.9 5,192,446 - PFLU_RS23105 0.77 -0.0 5,192,504 + PFLU_RS23105 0.87 -0.7 5,192,504 + PFLU_RS23105 0.87 +0.5 5,192,504 + PFLU_RS23105 0.87 +0.1 5,192,504 + PFLU_RS23105 0.87 -0.9 5,192,504 + PFLU_RS23105 0.87 -0.2 5,192,504 + PFLU_RS23105 0.87 -0.2 5,192,505 - PFLU_RS23105 0.87 -1.1 5,192,505 - PFLU_RS23105 0.87 -1.3 5,192,562 + +0.2 5,192,562 + -0.5 5,192,690 - PFLU_RS23110 0.12 +0.6 5,192,802 + PFLU_RS23110 0.23 +2.3 5,192,802 + PFLU_RS23110 0.23 +1.2 5,192,802 + PFLU_RS23110 0.23 +0.3 5,192,802 + PFLU_RS23110 0.23 +0.0 5,192,802 + PFLU_RS23110 0.23 +0.5 5,192,802 + PFLU_RS23110 0.23 -0.7 5,192,802 + PFLU_RS23110 0.23 +1.5 5,192,802 + PFLU_RS23110 0.23 +0.7 5,192,803 - PFLU_RS23110 0.23 -0.2 5,192,803 - PFLU_RS23110 0.23 +0.7 5,192,803 - PFLU_RS23110 0.23 -0.7 5,192,803 - PFLU_RS23110 0.23 +0.5 5,192,803 - PFLU_RS23110 0.23 +0.3 5,192,803 - PFLU_RS23110 0.23 +0.1 5,192,803 - PFLU_RS23110 0.23 +1.0
Or see this region's nucleotide sequence