Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3811

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3809 and Ac3H11_3810 are separated by 175 nucleotidesAc3H11_3810 and Ac3H11_3811 are separated by 68 nucleotidesAc3H11_3811 and Ac3H11_3812 are separated by 145 nucleotides Ac3H11_3809 - tungsten-containing formate dehydrogenase beta subunit, at 23,704 to 25,611 _3809 Ac3H11_3810 - Transcriptional regulator, TetR family, at 25,787 to 26,407 _3810 Ac3H11_3811 - putative membrane protein, at 26,476 to 26,883 _3811 Ac3H11_3812 - Hydrogen peroxide-inducible genes activator, at 27,029 to 27,991 _3812 Position (kb) 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 25.643 kb on + strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.644 kb on - strandat 25.659 kb on + strandat 25.659 kb on + strandat 25.768 kb on + strandat 25.768 kb on + strandat 25.769 kb on - strandat 25.769 kb on - strandat 25.769 kb on - strandat 26.121 kb on + strand, within Ac3H11_3810at 26.122 kb on - strand, within Ac3H11_3810at 26.376 kb on + strandat 26.376 kb on + strandat 26.377 kb on - strandat 26.377 kb on - strandat 26.377 kb on - strandat 26.399 kb on + strandat 26.400 kb on - strandat 26.400 kb on - strandat 26.433 kb on + strandat 26.433 kb on + strandat 26.434 kb on - strandat 26.447 kb on - strandat 26.457 kb on - strandat 26.471 kb on - strandat 26.471 kb on - strandat 26.502 kb on + strandat 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.560 kb on + strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.561 kb on - strand, within Ac3H11_3811at 26.572 kb on + strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.573 kb on - strand, within Ac3H11_3811at 26.787 kb on + strand, within Ac3H11_3811at 26.787 kb on + strand, within Ac3H11_3811at 26.788 kb on - strand, within Ac3H11_3811at 26.881 kb on + strandat 26.882 kb on - strandat 26.939 kb on + strandat 26.939 kb on + strandat 26.939 kb on + strandat 26.940 kb on - strandat 26.940 kb on - strandat 26.940 kb on - strandat 26.996 kb on + strandat 27.030 kb on + strandat 27.030 kb on + strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.031 kb on - strandat 27.127 kb on + strand, within Ac3H11_3812at 27.127 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.489 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.501 kb on + strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.502 kb on - strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812at 27.552 kb on + strand, within Ac3H11_3812

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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25,643 + +1.2
25,644 - +0.3
25,644 - +0.5
25,644 - -0.0
25,644 - +0.2
25,644 - -0.5
25,659 + -0.2
25,659 + -0.7
25,768 + +0.1
25,768 + +0.0
25,769 - -0.1
25,769 - +0.8
25,769 - +1.0
26,121 + Ac3H11_3810 0.54 -0.9
26,122 - Ac3H11_3810 0.54 -2.0
26,376 + +1.0
26,376 + +0.4
26,377 - -0.5
26,377 - +0.4
26,377 - -0.2
26,399 + +0.5
26,400 - +0.1
26,400 - +0.1
26,433 + +0.1
26,433 + -0.6
26,434 - +0.5
26,447 - +0.4
26,457 - +0.4
26,471 - -0.0
26,471 - -0.7
26,502 + -0.5
26,560 + Ac3H11_3811 0.21 +0.2
26,560 + Ac3H11_3811 0.21 +0.1
26,560 + Ac3H11_3811 0.21 +0.2
26,560 + Ac3H11_3811 0.21 -0.7
26,561 - Ac3H11_3811 0.21 -0.3
26,561 - Ac3H11_3811 0.21 -0.6
26,561 - Ac3H11_3811 0.21 +0.4
26,561 - Ac3H11_3811 0.21 +2.4
26,572 + Ac3H11_3811 0.24 +0.1
26,573 - Ac3H11_3811 0.24 -0.3
26,573 - Ac3H11_3811 0.24 -0.6
26,573 - Ac3H11_3811 0.24 +0.2
26,787 + Ac3H11_3811 0.76 -0.1
26,787 + Ac3H11_3811 0.76 -0.3
26,788 - Ac3H11_3811 0.76 +0.3
26,881 + -0.5
26,882 - +0.2
26,939 + -0.3
26,939 + -0.2
26,939 + +0.4
26,940 - -0.6
26,940 - -0.5
26,940 - +0.8
26,996 + +0.4
27,030 + -0.3
27,030 + +0.5
27,031 - -0.3
27,031 - -1.4
27,031 - -0.1
27,031 - -0.3
27,127 + Ac3H11_3812 0.10 -0.1
27,127 + Ac3H11_3812 0.10 -0.1
27,489 + Ac3H11_3812 0.48 +0.2
27,489 + Ac3H11_3812 0.48 -0.8
27,489 + Ac3H11_3812 0.48 +0.0
27,489 + Ac3H11_3812 0.48 +0.1
27,489 + Ac3H11_3812 0.48 -0.9
27,489 + Ac3H11_3812 0.48 -0.1
27,501 + Ac3H11_3812 0.49 +0.0
27,501 + Ac3H11_3812 0.49 +1.2
27,501 + Ac3H11_3812 0.49 +0.1
27,502 - Ac3H11_3812 0.49 -0.3
27,502 - Ac3H11_3812 0.49 -1.0
27,502 - Ac3H11_3812 0.49 -0.1
27,502 - Ac3H11_3812 0.49 +0.1
27,552 + Ac3H11_3812 0.54 +0.3
27,552 + Ac3H11_3812 0.54 -0.3
27,552 + Ac3H11_3812 0.54 +0.6

Or see this region's nucleotide sequence