Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4278.1

Experiment: PBS control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4276.1 and Xcc-8004.4277.1 are separated by 72 nucleotidesXcc-8004.4277.1 and Xcc-8004.4278.1 overlap by 4 nucleotidesXcc-8004.4278.1 and Xcc-8004.4279.1 are separated by 54 nucleotidesXcc-8004.4279.1 and Xcc-8004.4280.1 overlap by 1 nucleotides Xcc-8004.4276.1: Xcc-8004.4276.1 - Dihydrofolate reductase (EC 1.5.1.3), at 4,093,267 to 4,093,761 Xcc-8004.4276.1 Xcc-8004.4277.1: Xcc-8004.4277.1 - Thymidylate synthase (EC 2.1.1.45), at 4,093,834 to 4,094,628 Xcc-8004.4277.1 Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515 Xcc-8004.4278.1 Xcc-8004.4279.1: Xcc-8004.4279.1 - FIG004694: Hypothetical protein, at 4,095,570 to 4,096,061 Xcc-8004.4279.1 Xcc-8004.4280.1: Xcc-8004.4280.1 - Beta-propeller domains of methanol dehydrogenase type, at 4,096,061 to 4,096,966 Xcc-8004.4280.1 Position (kb) 4094 4095 4096Strain fitness (log2 ratio) -2 -1 0 1at 4093.798 kb on + strandat 4095.509 kb on - strandat 4095.509 kb on - strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.808 kb on - strand, within Xcc-8004.4279.1at 4095.808 kb on - strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4096.322 kb on + strand, within Xcc-8004.4280.1at 4096.322 kb on + strand, within Xcc-8004.4280.1at 4096.322 kb on + strand, within Xcc-8004.4280.1at 4096.323 kb on - strand, within Xcc-8004.4280.1at 4096.323 kb on - strand, within Xcc-8004.4280.1at 4096.414 kb on + strand, within Xcc-8004.4280.1at 4096.414 kb on + strand, within Xcc-8004.4280.1at 4096.414 kb on + strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1

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Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
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4,093,798 + +0.7
4,095,509 - -1.1
4,095,509 - -1.4
4,095,560 + -0.3
4,095,560 + -0.2
4,095,560 + +0.6
4,095,560 + +0.7
4,095,560 + +1.0
4,095,561 - +0.0
4,095,561 - +0.2
4,095,561 - +0.3
4,095,561 - -1.0
4,095,561 - -0.1
4,095,561 - -1.1
4,095,561 - +0.9
4,095,561 - -0.8
4,095,561 - +0.3
4,095,807 + Xcc-8004.4279.1 0.48 +0.6
4,095,807 + Xcc-8004.4279.1 0.48 -0.8
4,095,807 + Xcc-8004.4279.1 0.48 +0.8
4,095,807 + Xcc-8004.4279.1 0.48 -1.4
4,095,808 - Xcc-8004.4279.1 0.48 -1.2
4,095,808 - Xcc-8004.4279.1 0.48 +1.6
4,095,814 + Xcc-8004.4279.1 0.50 -0.0
4,095,814 + Xcc-8004.4279.1 0.50 +0.1
4,095,814 + Xcc-8004.4279.1 0.50 +0.3
4,095,814 + Xcc-8004.4279.1 0.50 -0.5
4,095,814 + Xcc-8004.4279.1 0.50 -0.4
4,095,814 + Xcc-8004.4279.1 0.50 -0.2
4,095,814 + Xcc-8004.4279.1 0.50 -0.4
4,095,814 + Xcc-8004.4279.1 0.50 +0.3
4,095,815 - Xcc-8004.4279.1 0.50 -1.3
4,095,815 - Xcc-8004.4279.1 0.50 +0.1
4,095,815 - Xcc-8004.4279.1 0.50 -0.4
4,095,815 - Xcc-8004.4279.1 0.50 -0.8
4,095,815 - Xcc-8004.4279.1 0.50 -0.3
4,095,815 - Xcc-8004.4279.1 0.50 -0.4
4,095,815 - Xcc-8004.4279.1 0.50 -1.0
4,096,322 + Xcc-8004.4280.1 0.29 -0.0
4,096,322 + Xcc-8004.4280.1 0.29 -1.8
4,096,322 + Xcc-8004.4280.1 0.29 -1.0
4,096,323 - Xcc-8004.4280.1 0.29 +0.0
4,096,323 - Xcc-8004.4280.1 0.29 +0.5
4,096,414 + Xcc-8004.4280.1 0.39 -0.7
4,096,414 + Xcc-8004.4280.1 0.39 -1.1
4,096,414 + Xcc-8004.4280.1 0.39 +1.5
4,096,415 - Xcc-8004.4280.1 0.39 -0.8
4,096,415 - Xcc-8004.4280.1 0.39 +0.7
4,096,415 - Xcc-8004.4280.1 0.39 -1.1
4,096,415 - Xcc-8004.4280.1 0.39 -1.0
4,096,415 - Xcc-8004.4280.1 0.39 +1.4
4,096,415 - Xcc-8004.4280.1 0.39 +0.2

Or see this region's nucleotide sequence