Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1949.1

Experiment: PBS control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1948.1 and Xcc-8004.1949.1 are separated by 235 nucleotidesXcc-8004.1949.1 and Xcc-8004.1950.1 are separated by 90 nucleotides Xcc-8004.1948.1: Xcc-8004.1948.1 - ATPase component BioM of energizing module of biotin ECF transporter, at 1,877,126 to 1,878,631 Xcc-8004.1948.1 Xcc-8004.1949.1: Xcc-8004.1949.1 - membrane-bound lytic murein transglycosylase D precursor, at 1,878,867 to 1,880,447 Xcc-8004.1949.1 Xcc-8004.1950.1: Xcc-8004.1950.1 - FIG01210891: hypothetical protein, at 1,880,538 to 1,881,527 Xcc-8004.1950.1 Position (kb) 1878 1879 1880 1881Strain fitness (log2 ratio) -2 -1 0 1 2at 1877.925 kb on + strand, within Xcc-8004.1948.1at 1877.926 kb on - strand, within Xcc-8004.1948.1at 1877.926 kb on - strand, within Xcc-8004.1948.1at 1877.926 kb on - strand, within Xcc-8004.1948.1at 1878.114 kb on + strand, within Xcc-8004.1948.1at 1878.114 kb on + strand, within Xcc-8004.1948.1at 1878.114 kb on + strand, within Xcc-8004.1948.1at 1878.114 kb on + strand, within Xcc-8004.1948.1at 1878.114 kb on + strand, within Xcc-8004.1948.1at 1878.114 kb on + strand, within Xcc-8004.1948.1at 1878.115 kb on - strand, within Xcc-8004.1948.1at 1878.115 kb on - strand, within Xcc-8004.1948.1at 1878.115 kb on - strand, within Xcc-8004.1948.1at 1878.115 kb on - strand, within Xcc-8004.1948.1at 1878.277 kb on + strand, within Xcc-8004.1948.1at 1878.328 kb on - strand, within Xcc-8004.1948.1at 1878.328 kb on - strand, within Xcc-8004.1948.1at 1878.328 kb on - strand, within Xcc-8004.1948.1at 1878.592 kb on + strandat 1878.662 kb on + strandat 1878.662 kb on + strandat 1878.663 kb on - strandat 1878.689 kb on + strandat 1878.689 kb on + strandat 1878.689 kb on + strandat 1878.690 kb on - strandat 1878.690 kb on - strandat 1878.690 kb on - strandat 1878.690 kb on - strandat 1878.690 kb on - strandat 1878.690 kb on - strandat 1878.856 kb on + strandat 1878.856 kb on + strandat 1878.857 kb on - strandat 1878.938 kb on + strandat 1879.158 kb on + strand, within Xcc-8004.1949.1at 1879.158 kb on + strand, within Xcc-8004.1949.1at 1879.158 kb on + strand, within Xcc-8004.1949.1at 1879.159 kb on - strand, within Xcc-8004.1949.1at 1879.159 kb on - strand, within Xcc-8004.1949.1at 1879.159 kb on - strand, within Xcc-8004.1949.1at 1879.159 kb on - strand, within Xcc-8004.1949.1at 1879.159 kb on - strand, within Xcc-8004.1949.1at 1879.344 kb on + strand, within Xcc-8004.1949.1at 1879.344 kb on + strand, within Xcc-8004.1949.1at 1879.344 kb on + strand, within Xcc-8004.1949.1at 1879.344 kb on + strand, within Xcc-8004.1949.1at 1879.344 kb on + strand, within Xcc-8004.1949.1at 1879.344 kb on + strand, within Xcc-8004.1949.1at 1879.345 kb on - strand, within Xcc-8004.1949.1at 1879.345 kb on - strand, within Xcc-8004.1949.1at 1879.345 kb on - strand, within Xcc-8004.1949.1at 1879.345 kb on - strand, within Xcc-8004.1949.1at 1879.345 kb on - strand, within Xcc-8004.1949.1at 1879.413 kb on + strand, within Xcc-8004.1949.1at 1879.413 kb on + strand, within Xcc-8004.1949.1at 1879.413 kb on + strand, within Xcc-8004.1949.1at 1879.413 kb on + strand, within Xcc-8004.1949.1at 1879.413 kb on + strand, within Xcc-8004.1949.1at 1879.414 kb on - strand, within Xcc-8004.1949.1at 1879.414 kb on - strand, within Xcc-8004.1949.1at 1879.422 kb on + strand, within Xcc-8004.1949.1at 1879.423 kb on - strand, within Xcc-8004.1949.1at 1879.423 kb on - strand, within Xcc-8004.1949.1at 1879.423 kb on - strand, within Xcc-8004.1949.1at 1879.663 kb on - strand, within Xcc-8004.1949.1at 1879.719 kb on + strand, within Xcc-8004.1949.1at 1879.719 kb on + strand, within Xcc-8004.1949.1at 1879.720 kb on - strand, within Xcc-8004.1949.1at 1879.720 kb on - strand, within Xcc-8004.1949.1at 1879.795 kb on - strand, within Xcc-8004.1949.1at 1879.795 kb on - strand, within Xcc-8004.1949.1at 1879.795 kb on - strand, within Xcc-8004.1949.1at 1879.824 kb on + strand, within Xcc-8004.1949.1at 1879.824 kb on + strand, within Xcc-8004.1949.1at 1879.824 kb on + strand, within Xcc-8004.1949.1at 1879.824 kb on + strand, within Xcc-8004.1949.1at 1879.824 kb on + strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.825 kb on - strand, within Xcc-8004.1949.1at 1879.876 kb on - strand, within Xcc-8004.1949.1at 1879.876 kb on - strand, within Xcc-8004.1949.1at 1879.876 kb on - strand, within Xcc-8004.1949.1at 1879.944 kb on + strand, within Xcc-8004.1949.1at 1879.944 kb on + strand, within Xcc-8004.1949.1at 1879.945 kb on - strand, within Xcc-8004.1949.1at 1879.945 kb on - strand, within Xcc-8004.1949.1at 1879.945 kb on - strand, within Xcc-8004.1949.1at 1879.989 kb on + strand, within Xcc-8004.1949.1at 1879.990 kb on - strand, within Xcc-8004.1949.1at 1879.990 kb on - strand, within Xcc-8004.1949.1at 1880.088 kb on + strand, within Xcc-8004.1949.1at 1880.088 kb on + strand, within Xcc-8004.1949.1at 1880.088 kb on + strand, within Xcc-8004.1949.1at 1880.089 kb on - strand, within Xcc-8004.1949.1at 1880.089 kb on - strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.187 kb on + strand, within Xcc-8004.1949.1at 1880.188 kb on - strand, within Xcc-8004.1949.1at 1880.188 kb on - strand, within Xcc-8004.1949.1at 1880.188 kb on - strand, within Xcc-8004.1949.1at 1880.188 kb on - strand, within Xcc-8004.1949.1at 1880.188 kb on - strand, within Xcc-8004.1949.1at 1880.188 kb on - strand, within Xcc-8004.1949.1at 1880.298 kb on + strandat 1880.298 kb on + strandat 1880.298 kb on + strandat 1880.299 kb on - strandat 1880.299 kb on - strandat 1880.343 kb on + strandat 1880.344 kb on - strandat 1880.344 kb on - strandat 1880.397 kb on + strandat 1880.398 kb on - strandat 1880.398 kb on - strandat 1880.452 kb on + strandat 1880.453 kb on - strandat 1880.453 kb on - strandat 1880.453 kb on - strandat 1880.453 kb on - strandat 1880.453 kb on - strandat 1880.453 kb on - strandat 1880.453 kb on - strandat 1880.479 kb on + strandat 1881.043 kb on + strand, within Xcc-8004.1950.1at 1881.043 kb on + strand, within Xcc-8004.1950.1at 1881.044 kb on - strand, within Xcc-8004.1950.1at 1881.044 kb on - strand, within Xcc-8004.1950.1at 1881.275 kb on - strand, within Xcc-8004.1950.1at 1881.275 kb on - strand, within Xcc-8004.1950.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PBS control
remove
1,877,925 + Xcc-8004.1948.1 0.53 -1.7
1,877,926 - Xcc-8004.1948.1 0.53 +0.2
1,877,926 - Xcc-8004.1948.1 0.53 -0.5
1,877,926 - Xcc-8004.1948.1 0.53 -0.3
1,878,114 + Xcc-8004.1948.1 0.66 -0.4
1,878,114 + Xcc-8004.1948.1 0.66 -1.6
1,878,114 + Xcc-8004.1948.1 0.66 +0.1
1,878,114 + Xcc-8004.1948.1 0.66 +0.2
1,878,114 + Xcc-8004.1948.1 0.66 +0.2
1,878,114 + Xcc-8004.1948.1 0.66 -0.2
1,878,115 - Xcc-8004.1948.1 0.66 +1.5
1,878,115 - Xcc-8004.1948.1 0.66 +0.3
1,878,115 - Xcc-8004.1948.1 0.66 -0.3
1,878,115 - Xcc-8004.1948.1 0.66 +0.0
1,878,277 + Xcc-8004.1948.1 0.76 +1.2
1,878,328 - Xcc-8004.1948.1 0.80 +0.3
1,878,328 - Xcc-8004.1948.1 0.80 +0.4
1,878,328 - Xcc-8004.1948.1 0.80 +0.3
1,878,592 + +0.5
1,878,662 + -0.8
1,878,662 + +0.6
1,878,663 - +1.7
1,878,689 + +0.5
1,878,689 + +0.5
1,878,689 + +0.3
1,878,690 - +0.6
1,878,690 - -0.5
1,878,690 - +0.8
1,878,690 - -0.3
1,878,690 - -0.5
1,878,690 - +0.5
1,878,856 + -0.5
1,878,856 + +1.4
1,878,857 - -2.2
1,878,938 + +0.2
1,879,158 + Xcc-8004.1949.1 0.18 -0.1
1,879,158 + Xcc-8004.1949.1 0.18 +0.6
1,879,158 + Xcc-8004.1949.1 0.18 +0.2
1,879,159 - Xcc-8004.1949.1 0.18 -0.1
1,879,159 - Xcc-8004.1949.1 0.18 +0.1
1,879,159 - Xcc-8004.1949.1 0.18 +0.1
1,879,159 - Xcc-8004.1949.1 0.18 +0.9
1,879,159 - Xcc-8004.1949.1 0.18 -0.1
1,879,344 + Xcc-8004.1949.1 0.30 -0.2
1,879,344 + Xcc-8004.1949.1 0.30 -1.4
1,879,344 + Xcc-8004.1949.1 0.30 +0.4
1,879,344 + Xcc-8004.1949.1 0.30 +0.3
1,879,344 + Xcc-8004.1949.1 0.30 +0.2
1,879,344 + Xcc-8004.1949.1 0.30 +0.1
1,879,345 - Xcc-8004.1949.1 0.30 -0.5
1,879,345 - Xcc-8004.1949.1 0.30 +0.6
1,879,345 - Xcc-8004.1949.1 0.30 +0.9
1,879,345 - Xcc-8004.1949.1 0.30 -0.0
1,879,345 - Xcc-8004.1949.1 0.30 +0.5
1,879,413 + Xcc-8004.1949.1 0.35 -2.0
1,879,413 + Xcc-8004.1949.1 0.35 -0.8
1,879,413 + Xcc-8004.1949.1 0.35 -1.4
1,879,413 + Xcc-8004.1949.1 0.35 -0.6
1,879,413 + Xcc-8004.1949.1 0.35 -2.4
1,879,414 - Xcc-8004.1949.1 0.35 -0.9
1,879,414 - Xcc-8004.1949.1 0.35 +0.8
1,879,422 + Xcc-8004.1949.1 0.35 -0.3
1,879,423 - Xcc-8004.1949.1 0.35 +0.9
1,879,423 - Xcc-8004.1949.1 0.35 +1.4
1,879,423 - Xcc-8004.1949.1 0.35 -0.6
1,879,663 - Xcc-8004.1949.1 0.50 -0.5
1,879,719 + Xcc-8004.1949.1 0.54 +0.1
1,879,719 + Xcc-8004.1949.1 0.54 +2.3
1,879,720 - Xcc-8004.1949.1 0.54 -0.8
1,879,720 - Xcc-8004.1949.1 0.54 -1.0
1,879,795 - Xcc-8004.1949.1 0.59 +2.4
1,879,795 - Xcc-8004.1949.1 0.59 +2.4
1,879,795 - Xcc-8004.1949.1 0.59 -1.3
1,879,824 + Xcc-8004.1949.1 0.61 -0.3
1,879,824 + Xcc-8004.1949.1 0.61 -1.2
1,879,824 + Xcc-8004.1949.1 0.61 -0.3
1,879,824 + Xcc-8004.1949.1 0.61 -1.2
1,879,824 + Xcc-8004.1949.1 0.61 -1.0
1,879,825 - Xcc-8004.1949.1 0.61 -0.3
1,879,825 - Xcc-8004.1949.1 0.61 +1.8
1,879,825 - Xcc-8004.1949.1 0.61 -0.3
1,879,825 - Xcc-8004.1949.1 0.61 -0.3
1,879,825 - Xcc-8004.1949.1 0.61 +0.3
1,879,825 - Xcc-8004.1949.1 0.61 -0.1
1,879,825 - Xcc-8004.1949.1 0.61 +0.2
1,879,825 - Xcc-8004.1949.1 0.61 -0.4
1,879,876 - Xcc-8004.1949.1 0.64 -1.0
1,879,876 - Xcc-8004.1949.1 0.64 +0.5
1,879,876 - Xcc-8004.1949.1 0.64 +0.4
1,879,944 + Xcc-8004.1949.1 0.68 +0.5
1,879,944 + Xcc-8004.1949.1 0.68 -0.6
1,879,945 - Xcc-8004.1949.1 0.68 +0.8
1,879,945 - Xcc-8004.1949.1 0.68 +0.9
1,879,945 - Xcc-8004.1949.1 0.68 +0.5
1,879,989 + Xcc-8004.1949.1 0.71 +0.5
1,879,990 - Xcc-8004.1949.1 0.71 -0.1
1,879,990 - Xcc-8004.1949.1 0.71 +0.0
1,880,088 + Xcc-8004.1949.1 0.77 +0.3
1,880,088 + Xcc-8004.1949.1 0.77 -1.0
1,880,088 + Xcc-8004.1949.1 0.77 -1.1
1,880,089 - Xcc-8004.1949.1 0.77 -1.7
1,880,089 - Xcc-8004.1949.1 0.77 -0.4
1,880,187 + Xcc-8004.1949.1 0.83 +0.3
1,880,187 + Xcc-8004.1949.1 0.83 -2.0
1,880,187 + Xcc-8004.1949.1 0.83 -1.5
1,880,187 + Xcc-8004.1949.1 0.83 -0.5
1,880,187 + Xcc-8004.1949.1 0.83 +0.7
1,880,187 + Xcc-8004.1949.1 0.83 +0.3
1,880,187 + Xcc-8004.1949.1 0.83 -0.8
1,880,188 - Xcc-8004.1949.1 0.84 +0.6
1,880,188 - Xcc-8004.1949.1 0.84 -0.3
1,880,188 - Xcc-8004.1949.1 0.84 -0.2
1,880,188 - Xcc-8004.1949.1 0.84 -0.3
1,880,188 - Xcc-8004.1949.1 0.84 +0.1
1,880,188 - Xcc-8004.1949.1 0.84 -0.2
1,880,298 + -0.7
1,880,298 + -0.3
1,880,298 + +0.6
1,880,299 - +0.5
1,880,299 - -0.4
1,880,343 + -2.1
1,880,344 - -1.5
1,880,344 - +1.2
1,880,397 + +0.0
1,880,398 - -1.3
1,880,398 - -0.3
1,880,452 + +0.2
1,880,453 - +0.4
1,880,453 - -0.1
1,880,453 - +0.3
1,880,453 - +0.6
1,880,453 - +0.5
1,880,453 - -0.3
1,880,453 - +0.5
1,880,479 + +0.2
1,881,043 + Xcc-8004.1950.1 0.51 -0.1
1,881,043 + Xcc-8004.1950.1 0.51 -1.5
1,881,044 - Xcc-8004.1950.1 0.51 -1.5
1,881,044 - Xcc-8004.1950.1 0.51 -0.4
1,881,275 - Xcc-8004.1950.1 0.74 -1.3
1,881,275 - Xcc-8004.1950.1 0.74 +0.5

Or see this region's nucleotide sequence