Experiment: PBS control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1440.1 and Xcc-8004.1441.1 are separated by 11 nucleotides Xcc-8004.1441.1 and Xcc-8004.1442.1 are separated by 91 nucleotides Xcc-8004.1442.1 and Xcc-8004.1443.1 overlap by 11 nucleotides
Xcc-8004.1440.1: Xcc-8004.1440.1 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 1,380,222 to 1,380,680
Xcc-8004.1440.1
Xcc-8004.1441.1: Xcc-8004.1441.1 - MotA/TolQ/ExbB proton channel family protein, at 1,380,692 to 1,381,471
Xcc-8004.1441.1
Xcc-8004.1442.1: Xcc-8004.1442.1 - Tol biopolymer transport system, TolR protein, at 1,381,563 to 1,382,012
Xcc-8004.1442.1
Xcc-8004.1443.1: Xcc-8004.1443.1 - TolA protein, at 1,382,002 to 1,383,039
Xcc-8004.1443.1
Position (kb)
1381
1382
1383 Strain fitness (log2 ratio)
-1
0
1 at 1380.655 kb on + strand at 1380.655 kb on + strand at 1380.675 kb on + strand at 1380.678 kb on + strand at 1380.678 kb on + strand at 1380.678 kb on + strand at 1380.678 kb on + strand at 1381.469 kb on + strand at 1381.469 kb on + strand at 1381.469 kb on + strand at 1381.470 kb on - strand at 1381.548 kb on + strand at 1381.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PBS control remove 1,380,655 + -0.0 1,380,655 + +1.2 1,380,675 + +0.0 1,380,678 + +1.2 1,380,678 + -1.2 1,380,678 + -1.5 1,380,678 + -0.7 1,381,469 + +0.5 1,381,469 + +0.1 1,381,469 + +0.1 1,381,470 - -0.0 1,381,548 + +1.1 1,381,548 + -0.6
Or see this region's nucleotide sequence