Experiment: Fusidic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0838 and merR overlap by 8 nucleotides merR and Synpcc7942_0840 are separated by 36 nucleotides Synpcc7942_0840 and Synpcc7942_0841 are separated by 197 nucleotides
Synpcc7942_0838: Synpcc7942_0838 - Elongator protein 3/MiaB/NifB, at 832,860 to 833,957
_0838
Synpcc7942_0839: merR - Nitrilase, at 833,950 to 834,954
merR
Synpcc7942_0840: Synpcc7942_0840 - hypothetical protein, at 834,991 to 835,473
_0840
Synpcc7942_0841: Synpcc7942_0841 - putative flavoprotein involved in K+ transport, at 835,671 to 837,011
_0841
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 832.952 kb on - strand at 832.953 kb on + strand at 832.961 kb on - strand at 832.961 kb on - strand at 832.984 kb on - strand, within Synpcc7942_0838 at 833.051 kb on + strand, within Synpcc7942_0838 at 833.097 kb on - strand, within Synpcc7942_0838 at 833.114 kb on - strand, within Synpcc7942_0838 at 833.160 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.166 kb on - strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.168 kb on + strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.176 kb on - strand, within Synpcc7942_0838 at 833.179 kb on + strand, within Synpcc7942_0838 at 833.184 kb on - strand, within Synpcc7942_0838 at 833.197 kb on - strand, within Synpcc7942_0838 at 833.242 kb on - strand, within Synpcc7942_0838 at 833.269 kb on + strand, within Synpcc7942_0838 at 833.279 kb on - strand, within Synpcc7942_0838 at 833.284 kb on - strand, within Synpcc7942_0838 at 833.292 kb on - strand, within Synpcc7942_0838 at 833.299 kb on + strand, within Synpcc7942_0838 at 833.304 kb on + strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.307 kb on - strand, within Synpcc7942_0838 at 833.308 kb on + strand, within Synpcc7942_0838 at 833.320 kb on + strand, within Synpcc7942_0838 at 833.326 kb on + strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.328 kb on - strand, within Synpcc7942_0838 at 833.338 kb on - strand, within Synpcc7942_0838 at 833.346 kb on + strand, within Synpcc7942_0838 at 833.359 kb on - strand, within Synpcc7942_0838 at 833.364 kb on - strand, within Synpcc7942_0838 at 833.382 kb on + strand, within Synpcc7942_0838 at 833.407 kb on + strand, within Synpcc7942_0838 at 833.417 kb on + strand, within Synpcc7942_0838 at 833.425 kb on + strand, within Synpcc7942_0838 at 833.433 kb on - strand, within Synpcc7942_0838 at 833.446 kb on - strand, within Synpcc7942_0838 at 833.474 kb on + strand, within Synpcc7942_0838 at 833.486 kb on + strand, within Synpcc7942_0838 at 833.492 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.494 kb on - strand, within Synpcc7942_0838 at 833.509 kb on + strand, within Synpcc7942_0838 at 833.537 kb on - strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.544 kb on + strand, within Synpcc7942_0838 at 833.586 kb on + strand, within Synpcc7942_0838 at 833.594 kb on + strand, within Synpcc7942_0838 at 833.601 kb on + strand, within Synpcc7942_0838 at 833.613 kb on - strand, within Synpcc7942_0838 at 833.614 kb on + strand, within Synpcc7942_0838 at 833.637 kb on - strand, within Synpcc7942_0838 at 833.651 kb on + strand, within Synpcc7942_0838 at 833.659 kb on + strand, within Synpcc7942_0838 at 833.712 kb on - strand, within Synpcc7942_0838 at 833.739 kb on - strand, within Synpcc7942_0838 at 833.762 kb on + strand, within Synpcc7942_0838 at 833.809 kb on + strand, within Synpcc7942_0838 at 833.817 kb on - strand, within Synpcc7942_0838 at 833.846 kb on + strand, within Synpcc7942_0838 at 833.856 kb on + strand at 833.927 kb on + strand at 833.927 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.929 kb on + strand at 833.933 kb on - strand at 833.935 kb on - strand at 833.935 kb on - strand at 833.935 kb on - strand at 833.953 kb on + strand at 833.960 kb on + strand at 833.961 kb on - strand at 833.961 kb on - strand at 833.968 kb on - strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.975 kb on + strand at 833.983 kb on - strand at 833.983 kb on - strand at 833.983 kb on - strand at 833.993 kb on - strand at 833.998 kb on - strand at 834.029 kb on - strand at 834.054 kb on - strand, within merR at 834.066 kb on + strand, within merR at 834.071 kb on + strand, within merR at 834.074 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.084 kb on - strand, within merR at 834.107 kb on - strand, within merR at 834.132 kb on - strand, within merR at 834.189 kb on - strand, within merR at 834.202 kb on - strand, within merR at 834.204 kb on + strand, within merR at 834.204 kb on + strand, within merR at 834.212 kb on - strand, within merR at 834.212 kb on - strand, within merR at 834.217 kb on - strand, within merR at 834.222 kb on - strand, within merR at 834.226 kb on + strand, within merR at 834.246 kb on - strand, within merR at 834.253 kb on - strand, within merR at 834.291 kb on + strand, within merR at 834.315 kb on + strand, within merR at 834.318 kb on - strand, within merR at 834.351 kb on + strand, within merR at 834.375 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.448 kb on + strand, within merR at 834.455 kb on + strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.456 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.463 kb on - strand, within merR at 834.476 kb on + strand, within merR at 834.481 kb on + strand, within merR at 834.482 kb on + strand, within merR at 834.488 kb on + strand, within merR at 834.489 kb on - strand, within merR at 834.490 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.496 kb on - strand, within merR at 834.513 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.514 kb on + strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand, within merR at 834.522 kb on - strand at 834.527 kb on + strand, within merR at 834.537 kb on - strand, within merR at 834.546 kb on - strand, within merR at 834.547 kb on - strand, within merR at 834.616 kb on - strand, within merR at 834.651 kb on + strand, within merR at 834.651 kb on - strand, within merR at 834.659 kb on - strand, within merR at 834.711 kb on + strand, within merR at 834.746 kb on + strand, within merR at 834.754 kb on - strand, within merR at 834.800 kb on + strand, within merR at 834.904 kb on + strand at 834.912 kb on - strand at 834.912 kb on - strand at 834.927 kb on - strand at 834.962 kb on + strand at 835.139 kb on + strand, within Synpcc7942_0840 at 835.233 kb on - strand at 835.259 kb on + strand, within Synpcc7942_0840 at 835.259 kb on + strand, within Synpcc7942_0840 at 835.262 kb on - strand, within Synpcc7942_0840 at 835.341 kb on + strand, within Synpcc7942_0840 at 835.472 kb on - strand at 835.673 kb on + strand at 835.705 kb on + strand at 835.705 kb on + strand at 835.706 kb on + strand at 835.713 kb on - strand at 835.713 kb on - strand at 835.714 kb on - strand at 835.714 kb on - strand at 835.732 kb on + strand at 835.740 kb on - strand at 835.770 kb on + strand at 835.778 kb on - strand at 835.792 kb on - strand at 835.813 kb on + strand, within Synpcc7942_0841 at 835.823 kb on - strand, within Synpcc7942_0841 at 835.827 kb on + strand, within Synpcc7942_0841 at 835.828 kb on - strand, within Synpcc7942_0841 at 835.835 kb on - strand, within Synpcc7942_0841 at 835.860 kb on + strand, within Synpcc7942_0841 at 835.933 kb on - strand, within Synpcc7942_0841
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.25 mg/ml remove 832,952 - +0.2 832,953 + -1.4 832,961 - +0.3 832,961 - -1.1 832,984 - Synpcc7942_0838 0.11 -0.9 833,051 + Synpcc7942_0838 0.17 -0.1 833,097 - Synpcc7942_0838 0.22 -2.1 833,114 - Synpcc7942_0838 0.23 -0.7 833,160 - Synpcc7942_0838 0.27 -0.8 833,166 - Synpcc7942_0838 0.28 +0.1 833,166 - Synpcc7942_0838 0.28 -0.7 833,166 - Synpcc7942_0838 0.28 +0.3 833,168 + Synpcc7942_0838 0.28 +1.9 833,168 + Synpcc7942_0838 0.28 +0.2 833,168 + Synpcc7942_0838 0.28 +0.1 833,168 + Synpcc7942_0838 0.28 +0.4 833,168 + Synpcc7942_0838 0.28 -0.7 833,168 + Synpcc7942_0838 0.28 -0.1 833,176 - Synpcc7942_0838 0.29 -2.7 833,176 - Synpcc7942_0838 0.29 -0.9 833,176 - Synpcc7942_0838 0.29 -1.7 833,179 + Synpcc7942_0838 0.29 -1.5 833,184 - Synpcc7942_0838 0.30 +0.5 833,197 - Synpcc7942_0838 0.31 +1.3 833,242 - Synpcc7942_0838 0.35 +0.0 833,269 + Synpcc7942_0838 0.37 +0.9 833,279 - Synpcc7942_0838 0.38 +0.4 833,284 - Synpcc7942_0838 0.39 +0.9 833,292 - Synpcc7942_0838 0.39 +1.2 833,299 + Synpcc7942_0838 0.40 +0.2 833,304 + Synpcc7942_0838 0.40 +0.5 833,307 - Synpcc7942_0838 0.41 -1.2 833,307 - Synpcc7942_0838 0.41 -2.1 833,308 + Synpcc7942_0838 0.41 -0.2 833,320 + Synpcc7942_0838 0.42 +1.9 833,326 + Synpcc7942_0838 0.42 +1.2 833,328 - Synpcc7942_0838 0.43 -1.1 833,328 - Synpcc7942_0838 0.43 +0.1 833,338 - Synpcc7942_0838 0.44 -1.4 833,346 + Synpcc7942_0838 0.44 +0.3 833,359 - Synpcc7942_0838 0.45 -0.1 833,364 - Synpcc7942_0838 0.46 +1.0 833,382 + Synpcc7942_0838 0.48 -0.1 833,407 + Synpcc7942_0838 0.50 -0.6 833,417 + Synpcc7942_0838 0.51 -0.9 833,425 + Synpcc7942_0838 0.51 -0.7 833,433 - Synpcc7942_0838 0.52 +2.9 833,446 - Synpcc7942_0838 0.53 +0.8 833,474 + Synpcc7942_0838 0.56 -2.9 833,486 + Synpcc7942_0838 0.57 +0.2 833,492 - Synpcc7942_0838 0.58 -0.1 833,494 - Synpcc7942_0838 0.58 -1.8 833,494 - Synpcc7942_0838 0.58 +0.5 833,494 - Synpcc7942_0838 0.58 +0.9 833,509 + Synpcc7942_0838 0.59 -0.4 833,537 - Synpcc7942_0838 0.62 +0.5 833,544 + Synpcc7942_0838 0.62 +0.9 833,544 + Synpcc7942_0838 0.62 +0.1 833,544 + Synpcc7942_0838 0.62 -1.5 833,586 + Synpcc7942_0838 0.66 -0.9 833,594 + Synpcc7942_0838 0.67 +0.4 833,601 + Synpcc7942_0838 0.67 +1.2 833,613 - Synpcc7942_0838 0.69 -0.1 833,614 + Synpcc7942_0838 0.69 +0.7 833,637 - Synpcc7942_0838 0.71 -2.1 833,651 + Synpcc7942_0838 0.72 +0.5 833,659 + Synpcc7942_0838 0.73 +1.5 833,712 - Synpcc7942_0838 0.78 +1.5 833,739 - Synpcc7942_0838 0.80 +0.7 833,762 + Synpcc7942_0838 0.82 +0.7 833,809 + Synpcc7942_0838 0.86 +0.0 833,817 - Synpcc7942_0838 0.87 +0.4 833,846 + Synpcc7942_0838 0.90 +0.2 833,856 + -0.7 833,927 + +0.4 833,927 + +2.0 833,929 + -1.1 833,929 + -0.1 833,929 + +0.4 833,929 + -2.7 833,933 - -1.7 833,935 - +0.7 833,935 - +0.9 833,935 - +0.7 833,953 + +0.9 833,960 + -0.3 833,961 - +0.1 833,961 - +0.1 833,968 - -0.3 833,975 + +0.9 833,975 + -0.4 833,975 + -2.3 833,975 + -0.7 833,983 - -0.4 833,983 - +0.7 833,983 - +2.0 833,993 - +0.1 833,998 - +1.0 834,029 - -0.6 834,054 - merR Synpcc7942_0839 0.10 -1.4 834,066 + merR Synpcc7942_0839 0.12 -0.6 834,071 + merR Synpcc7942_0839 0.12 +0.5 834,074 - merR Synpcc7942_0839 0.12 +0.9 834,084 - merR Synpcc7942_0839 0.13 +0.3 834,084 - merR Synpcc7942_0839 0.13 +0.1 834,107 - merR Synpcc7942_0839 0.16 -1.3 834,132 - merR Synpcc7942_0839 0.18 -2.4 834,189 - merR Synpcc7942_0839 0.24 +1.0 834,202 - merR Synpcc7942_0839 0.25 +1.0 834,204 + merR Synpcc7942_0839 0.25 -0.1 834,204 + merR Synpcc7942_0839 0.25 -0.3 834,212 - merR Synpcc7942_0839 0.26 -0.1 834,212 - merR Synpcc7942_0839 0.26 -0.5 834,217 - merR Synpcc7942_0839 0.27 +2.9 834,222 - merR Synpcc7942_0839 0.27 -1.3 834,226 + merR Synpcc7942_0839 0.27 -0.1 834,246 - merR Synpcc7942_0839 0.29 +0.5 834,253 - merR Synpcc7942_0839 0.30 -1.4 834,291 + merR Synpcc7942_0839 0.34 -0.7 834,315 + merR Synpcc7942_0839 0.36 -1.7 834,318 - merR Synpcc7942_0839 0.37 -0.1 834,351 + merR Synpcc7942_0839 0.40 -0.1 834,375 + merR Synpcc7942_0839 0.42 -0.1 834,448 + merR Synpcc7942_0839 0.50 -0.1 834,448 + merR Synpcc7942_0839 0.50 -0.8 834,448 + merR Synpcc7942_0839 0.50 +0.3 834,448 + merR Synpcc7942_0839 0.50 +0.8 834,455 + merR Synpcc7942_0839 0.50 +1.2 834,456 - merR Synpcc7942_0839 0.50 +1.0 834,456 - merR Synpcc7942_0839 0.50 +0.5 834,456 - merR Synpcc7942_0839 0.50 -0.1 834,463 - merR Synpcc7942_0839 0.51 -0.7 834,463 - merR Synpcc7942_0839 0.51 -2.4 834,476 + merR Synpcc7942_0839 0.52 -0.1 834,481 + merR Synpcc7942_0839 0.53 -1.3 834,482 + merR Synpcc7942_0839 0.53 -1.2 834,488 + merR Synpcc7942_0839 0.54 +0.4 834,489 - merR Synpcc7942_0839 0.54 +1.5 834,490 - merR Synpcc7942_0839 0.54 -1.7 834,496 - merR Synpcc7942_0839 0.54 +0.0 834,496 - merR Synpcc7942_0839 0.54 -1.3 834,496 - merR Synpcc7942_0839 0.54 -0.3 834,496 - merR Synpcc7942_0839 0.54 +1.7 834,496 - merR Synpcc7942_0839 0.54 +1.5 834,496 - merR Synpcc7942_0839 0.54 -0.6 834,513 + merR Synpcc7942_0839 0.56 +0.9 834,514 + merR Synpcc7942_0839 0.56 +0.1 834,514 + merR Synpcc7942_0839 0.56 -0.1 834,514 + merR Synpcc7942_0839 0.56 -0.6 834,514 + merR Synpcc7942_0839 0.56 -1.3 834,522 - merR Synpcc7942_0839 0.57 +0.2 834,522 - merR Synpcc7942_0839 0.57 +0.1 834,522 - merR Synpcc7942_0839 0.57 +0.2 834,522 - merR Synpcc7942_0839 0.57 +1.3 834,522 - +0.9 834,527 + merR Synpcc7942_0839 0.57 -0.5 834,537 - merR Synpcc7942_0839 0.58 -0.9 834,546 - merR Synpcc7942_0839 0.59 -0.5 834,547 - merR Synpcc7942_0839 0.59 -1.4 834,616 - merR Synpcc7942_0839 0.66 +0.9 834,651 + merR Synpcc7942_0839 0.70 -0.8 834,651 - merR Synpcc7942_0839 0.70 +0.2 834,659 - merR Synpcc7942_0839 0.71 +0.5 834,711 + merR Synpcc7942_0839 0.76 -1.4 834,746 + merR Synpcc7942_0839 0.79 +0.4 834,754 - merR Synpcc7942_0839 0.80 +1.2 834,800 + merR Synpcc7942_0839 0.85 +0.0 834,904 + -0.9 834,912 - +0.1 834,912 - -2.1 834,927 - +1.5 834,962 + +0.1 835,139 + Synpcc7942_0840 0.31 +0.9 835,233 - +1.5 835,259 + Synpcc7942_0840 0.55 -0.9 835,259 + Synpcc7942_0840 0.55 +1.5 835,262 - Synpcc7942_0840 0.56 +2.1 835,341 + Synpcc7942_0840 0.72 -0.6 835,472 - +0.2 835,673 + -0.1 835,705 + +0.3 835,705 + -0.5 835,706 + +0.0 835,713 - +0.8 835,713 - +0.7 835,714 - +0.5 835,714 - +0.3 835,732 + +1.3 835,740 - +1.3 835,770 + -0.1 835,778 - +0.2 835,792 - +1.5 835,813 + Synpcc7942_0841 0.11 -1.6 835,823 - Synpcc7942_0841 0.11 +0.7 835,827 + Synpcc7942_0841 0.12 +0.7 835,828 - Synpcc7942_0841 0.12 +0.1 835,835 - Synpcc7942_0841 0.12 -0.3 835,860 + Synpcc7942_0841 0.14 +1.2 835,933 - Synpcc7942_0841 0.20 +0.4
Or see this region's nucleotide sequence