Experiment: Fusidic 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0789 and rbp3 are separated by 114 nucleotides rbp3 and pcnB are separated by 262 nucleotides pcnB and Synpcc7942_0792 are separated by 43 nucleotides
Synpcc7942_0789: Synpcc7942_0789 - hypothetical protein, at 784,844 to 785,167
_0789
Synpcc7942_0790: rbp3 - RNA-binding region RNP-1, at 785,282 to 785,710
rbp3
Synpcc7942_0791: pcnB - polyA polymerase, at 785,973 to 787,211
pcnB
Synpcc7942_0792: Synpcc7942_0792 - putative multidrug efflux MFS transporter, at 787,255 to 788,490
_0792
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 784.978 kb on - strand, within Synpcc7942_0789 at 784.991 kb on + strand, within Synpcc7942_0789 at 785.025 kb on - strand, within Synpcc7942_0789 at 785.032 kb on - strand, within Synpcc7942_0789 at 785.034 kb on + strand, within Synpcc7942_0789 at 785.034 kb on + strand, within Synpcc7942_0789 at 785.062 kb on - strand, within Synpcc7942_0789 at 785.081 kb on + strand, within Synpcc7942_0789 at 785.081 kb on + strand, within Synpcc7942_0789 at 785.144 kb on - strand at 785.148 kb on - strand at 785.152 kb on + strand at 785.152 kb on + strand at 785.158 kb on - strand at 785.165 kb on + strand at 785.166 kb on - strand at 785.264 kb on - strand at 785.264 kb on - strand at 785.264 kb on - strand at 785.291 kb on + strand at 785.378 kb on - strand, within rbp3 at 785.378 kb on - strand, within rbp3 at 785.501 kb on + strand, within rbp3 at 785.509 kb on - strand, within rbp3 at 785.563 kb on - strand, within rbp3 at 785.563 kb on - strand, within rbp3 at 785.580 kb on - strand, within rbp3 at 785.662 kb on - strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.665 kb on + strand, within rbp3 at 785.673 kb on - strand at 785.673 kb on - strand at 785.673 kb on - strand at 785.673 kb on - strand at 785.720 kb on - strand at 785.738 kb on + strand at 785.746 kb on - strand at 785.772 kb on + strand at 785.824 kb on - strand at 785.860 kb on + strand at 785.870 kb on + strand at 785.888 kb on - strand at 785.895 kb on + strand at 785.895 kb on + strand at 785.907 kb on + strand at 785.908 kb on + strand at 785.908 kb on + strand at 785.908 kb on + strand at 785.915 kb on + strand at 785.947 kb on + strand at 785.952 kb on + strand at 785.952 kb on + strand at 785.952 kb on + strand at 785.975 kb on + strand at 785.981 kb on - strand at 786.001 kb on - strand at 786.001 kb on - strand at 787.168 kb on + strand at 787.180 kb on + strand at 787.188 kb on - strand at 787.188 kb on - strand at 787.188 kb on - strand at 787.188 kb on - strand at 787.228 kb on + strand at 787.238 kb on + strand at 787.238 kb on + strand at 787.246 kb on - strand at 787.246 kb on - strand at 787.246 kb on - strand at 787.246 kb on - strand at 787.246 kb on - strand at 787.246 kb on - strand at 787.247 kb on - strand at 787.247 kb on - strand at 787.247 kb on - strand at 787.247 kb on - strand at 787.262 kb on - strand at 787.285 kb on - strand at 787.285 kb on - strand at 787.294 kb on - strand at 787.294 kb on - strand at 787.294 kb on - strand at 787.294 kb on - strand at 787.317 kb on - strand at 787.321 kb on + strand at 787.333 kb on + strand at 787.334 kb on + strand at 787.334 kb on - strand at 787.341 kb on - strand at 787.347 kb on - strand at 787.353 kb on - strand at 787.380 kb on + strand, within Synpcc7942_0792 at 787.386 kb on - strand, within Synpcc7942_0792 at 787.395 kb on + strand, within Synpcc7942_0792 at 787.411 kb on - strand, within Synpcc7942_0792 at 787.449 kb on + strand, within Synpcc7942_0792 at 787.449 kb on + strand, within Synpcc7942_0792 at 787.449 kb on + strand, within Synpcc7942_0792 at 787.449 kb on + strand, within Synpcc7942_0792 at 787.476 kb on - strand, within Synpcc7942_0792 at 787.477 kb on - strand, within Synpcc7942_0792 at 787.517 kb on + strand, within Synpcc7942_0792 at 787.525 kb on - strand, within Synpcc7942_0792 at 787.525 kb on - strand, within Synpcc7942_0792 at 787.525 kb on - strand, within Synpcc7942_0792 at 787.528 kb on + strand, within Synpcc7942_0792 at 787.536 kb on - strand, within Synpcc7942_0792 at 787.538 kb on + strand, within Synpcc7942_0792 at 787.556 kb on + strand, within Synpcc7942_0792 at 787.556 kb on + strand, within Synpcc7942_0792 at 787.559 kb on - strand, within Synpcc7942_0792 at 787.634 kb on - strand, within Synpcc7942_0792 at 787.653 kb on - strand, within Synpcc7942_0792 at 787.684 kb on - strand, within Synpcc7942_0792 at 787.692 kb on + strand, within Synpcc7942_0792 at 787.692 kb on + strand, within Synpcc7942_0792 at 787.694 kb on + strand, within Synpcc7942_0792 at 787.700 kb on - strand, within Synpcc7942_0792 at 787.718 kb on + strand, within Synpcc7942_0792 at 787.718 kb on + strand, within Synpcc7942_0792 at 787.718 kb on + strand, within Synpcc7942_0792 at 787.724 kb on + strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.726 kb on - strand, within Synpcc7942_0792 at 787.781 kb on + strand, within Synpcc7942_0792 at 787.782 kb on - strand, within Synpcc7942_0792 at 787.789 kb on - strand, within Synpcc7942_0792 at 787.799 kb on - strand, within Synpcc7942_0792 at 787.801 kb on + strand, within Synpcc7942_0792 at 787.806 kb on + strand, within Synpcc7942_0792 at 787.806 kb on + strand, within Synpcc7942_0792 at 787.806 kb on + strand, within Synpcc7942_0792 at 787.806 kb on + strand, within Synpcc7942_0792 at 787.806 kb on + strand, within Synpcc7942_0792 at 787.814 kb on - strand, within Synpcc7942_0792 at 787.814 kb on - strand, within Synpcc7942_0792 at 787.814 kb on - strand, within Synpcc7942_0792 at 787.814 kb on - strand, within Synpcc7942_0792 at 787.834 kb on + strand, within Synpcc7942_0792 at 787.837 kb on - strand, within Synpcc7942_0792 at 787.837 kb on - strand, within Synpcc7942_0792 at 787.842 kb on - strand, within Synpcc7942_0792 at 787.843 kb on - strand, within Synpcc7942_0792 at 787.863 kb on + strand at 787.897 kb on + strand, within Synpcc7942_0792 at 787.914 kb on + strand, within Synpcc7942_0792 at 787.919 kb on + strand, within Synpcc7942_0792 at 787.919 kb on + strand at 787.939 kb on + strand, within Synpcc7942_0792 at 787.940 kb on - strand, within Synpcc7942_0792 at 787.966 kb on + strand, within Synpcc7942_0792 at 787.966 kb on + strand, within Synpcc7942_0792 at 787.974 kb on - strand, within Synpcc7942_0792 at 787.978 kb on + strand, within Synpcc7942_0792 at 787.978 kb on + strand, within Synpcc7942_0792 at 787.986 kb on - strand, within Synpcc7942_0792 at 787.989 kb on - strand, within Synpcc7942_0792 at 787.994 kb on + strand, within Synpcc7942_0792 at 788.021 kb on + strand, within Synpcc7942_0792 at 788.034 kb on - strand, within Synpcc7942_0792 at 788.039 kb on - strand, within Synpcc7942_0792 at 788.039 kb on - strand, within Synpcc7942_0792 at 788.075 kb on + strand, within Synpcc7942_0792 at 788.129 kb on - strand, within Synpcc7942_0792 at 788.132 kb on + strand, within Synpcc7942_0792 at 788.140 kb on - strand, within Synpcc7942_0792 at 788.147 kb on + strand, within Synpcc7942_0792 at 788.157 kb on + strand, within Synpcc7942_0792 at 788.157 kb on - strand, within Synpcc7942_0792 at 788.157 kb on - strand, within Synpcc7942_0792 at 788.193 kb on - strand, within Synpcc7942_0792
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.25 mg/ml remove 784,978 - Synpcc7942_0789 0.41 +1.0 784,991 + Synpcc7942_0789 0.45 +0.8 785,025 - Synpcc7942_0789 0.56 +0.7 785,032 - Synpcc7942_0789 0.58 -0.4 785,034 + Synpcc7942_0789 0.59 +0.3 785,034 + Synpcc7942_0789 0.59 +1.8 785,062 - Synpcc7942_0789 0.67 -0.1 785,081 + Synpcc7942_0789 0.73 -0.7 785,081 + Synpcc7942_0789 0.73 +1.0 785,144 - +1.5 785,148 - -1.5 785,152 + +0.8 785,152 + +0.9 785,158 - -1.1 785,165 + +0.1 785,166 - +1.6 785,264 - -2.1 785,264 - +0.1 785,264 - -0.9 785,291 + +0.2 785,378 - rbp3 Synpcc7942_0790 0.22 +0.5 785,378 - rbp3 Synpcc7942_0790 0.22 -0.1 785,501 + rbp3 Synpcc7942_0790 0.51 -2.1 785,509 - rbp3 Synpcc7942_0790 0.53 +0.1 785,563 - rbp3 Synpcc7942_0790 0.66 -0.9 785,563 - rbp3 Synpcc7942_0790 0.66 -2.4 785,580 - rbp3 Synpcc7942_0790 0.69 -0.1 785,662 - rbp3 Synpcc7942_0790 0.89 -2.4 785,665 + rbp3 Synpcc7942_0790 0.89 -0.1 785,665 + rbp3 Synpcc7942_0790 0.89 -0.9 785,665 + rbp3 Synpcc7942_0790 0.89 -1.7 785,665 + rbp3 Synpcc7942_0790 0.89 -0.1 785,673 - -0.1 785,673 - +0.3 785,673 - -0.1 785,673 - -0.6 785,720 - +0.9 785,738 + -1.1 785,746 - +0.9 785,772 + +0.1 785,824 - -0.4 785,860 + +0.6 785,870 + +0.5 785,888 - -0.1 785,895 + -1.2 785,895 + +0.3 785,907 + -0.6 785,908 + -0.1 785,908 + +1.5 785,908 + +0.1 785,915 + +1.9 785,947 + -1.4 785,952 + -1.1 785,952 + -1.1 785,952 + -1.3 785,975 + -3.3 785,981 - +1.3 786,001 - -0.9 786,001 - -0.7 787,168 + -0.1 787,180 + -0.4 787,188 - +0.1 787,188 - -1.3 787,188 - +0.0 787,188 - +1.0 787,228 + -1.6 787,238 + +0.9 787,238 + +0.9 787,246 - +0.9 787,246 - -0.5 787,246 - +2.5 787,246 - +1.9 787,246 - +0.3 787,246 - +0.2 787,247 - -1.9 787,247 - -2.4 787,247 - -0.9 787,247 - -0.9 787,262 - +2.7 787,285 - -1.0 787,285 - -0.3 787,294 - +0.8 787,294 - -1.1 787,294 - +1.1 787,294 - -0.2 787,317 - -0.4 787,321 + -2.0 787,333 + +1.0 787,334 + -0.1 787,334 - -1.5 787,341 - -1.8 787,347 - +0.5 787,353 - -2.9 787,380 + Synpcc7942_0792 0.10 +0.9 787,386 - Synpcc7942_0792 0.11 +1.9 787,395 + Synpcc7942_0792 0.11 -1.6 787,411 - Synpcc7942_0792 0.13 -0.8 787,449 + Synpcc7942_0792 0.16 +1.5 787,449 + Synpcc7942_0792 0.16 -0.7 787,449 + Synpcc7942_0792 0.16 +0.5 787,449 + Synpcc7942_0792 0.16 -0.1 787,476 - Synpcc7942_0792 0.18 +0.8 787,477 - Synpcc7942_0792 0.18 +0.5 787,517 + Synpcc7942_0792 0.21 +1.4 787,525 - Synpcc7942_0792 0.22 -1.9 787,525 - Synpcc7942_0792 0.22 -2.1 787,525 - Synpcc7942_0792 0.22 +0.1 787,528 + Synpcc7942_0792 0.22 -0.1 787,536 - Synpcc7942_0792 0.23 +0.0 787,538 + Synpcc7942_0792 0.23 -0.3 787,556 + Synpcc7942_0792 0.24 +1.2 787,556 + Synpcc7942_0792 0.24 +1.3 787,559 - Synpcc7942_0792 0.25 +0.1 787,634 - Synpcc7942_0792 0.31 -1.4 787,653 - Synpcc7942_0792 0.32 -1.7 787,684 - Synpcc7942_0792 0.35 +0.1 787,692 + Synpcc7942_0792 0.35 -1.1 787,692 + Synpcc7942_0792 0.35 +0.7 787,694 + Synpcc7942_0792 0.36 +0.5 787,700 - Synpcc7942_0792 0.36 -0.1 787,718 + Synpcc7942_0792 0.37 +1.2 787,718 + Synpcc7942_0792 0.37 +1.5 787,718 + Synpcc7942_0792 0.37 -1.7 787,724 + Synpcc7942_0792 0.38 -0.9 787,726 - Synpcc7942_0792 0.38 -2.7 787,726 - Synpcc7942_0792 0.38 +1.6 787,726 - Synpcc7942_0792 0.38 +2.0 787,726 - Synpcc7942_0792 0.38 -0.2 787,726 - Synpcc7942_0792 0.38 +1.9 787,726 - Synpcc7942_0792 0.38 +0.2 787,726 - Synpcc7942_0792 0.38 +0.7 787,781 + Synpcc7942_0792 0.43 -1.0 787,782 - Synpcc7942_0792 0.43 +1.4 787,789 - Synpcc7942_0792 0.43 +0.4 787,799 - Synpcc7942_0792 0.44 +0.7 787,801 + Synpcc7942_0792 0.44 +1.2 787,806 + Synpcc7942_0792 0.45 +3.0 787,806 + Synpcc7942_0792 0.45 -0.6 787,806 + Synpcc7942_0792 0.45 -0.3 787,806 + Synpcc7942_0792 0.45 +2.5 787,806 + Synpcc7942_0792 0.45 -0.1 787,814 - Synpcc7942_0792 0.45 +1.9 787,814 - Synpcc7942_0792 0.45 +0.0 787,814 - Synpcc7942_0792 0.45 +2.0 787,814 - Synpcc7942_0792 0.45 +0.5 787,834 + Synpcc7942_0792 0.47 +1.2 787,837 - Synpcc7942_0792 0.47 -0.9 787,837 - Synpcc7942_0792 0.47 -1.9 787,842 - Synpcc7942_0792 0.47 +0.7 787,843 - Synpcc7942_0792 0.48 +0.6 787,863 + -1.1 787,897 + Synpcc7942_0792 0.52 -0.1 787,914 + Synpcc7942_0792 0.53 +0.2 787,919 + Synpcc7942_0792 0.54 +0.5 787,919 + +0.9 787,939 + Synpcc7942_0792 0.55 +2.3 787,940 - Synpcc7942_0792 0.55 +1.2 787,966 + Synpcc7942_0792 0.58 +0.1 787,966 + Synpcc7942_0792 0.58 -0.2 787,974 - Synpcc7942_0792 0.58 -0.4 787,978 + Synpcc7942_0792 0.58 -2.7 787,978 + Synpcc7942_0792 0.58 +0.9 787,986 - Synpcc7942_0792 0.59 -1.5 787,989 - Synpcc7942_0792 0.59 -0.4 787,994 + Synpcc7942_0792 0.60 -0.3 788,021 + Synpcc7942_0792 0.62 +0.9 788,034 - Synpcc7942_0792 0.63 -0.3 788,039 - Synpcc7942_0792 0.63 -0.3 788,039 - Synpcc7942_0792 0.63 -0.3 788,075 + Synpcc7942_0792 0.66 +0.9 788,129 - Synpcc7942_0792 0.71 +3.0 788,132 + Synpcc7942_0792 0.71 +0.9 788,140 - Synpcc7942_0792 0.72 +1.4 788,147 + Synpcc7942_0792 0.72 +1.9 788,157 + Synpcc7942_0792 0.73 -0.3 788,157 - Synpcc7942_0792 0.73 +0.6 788,157 - Synpcc7942_0792 0.73 +1.1 788,193 - Synpcc7942_0792 0.76 +1.5
Or see this region's nucleotide sequence