Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18475

Experiment: R2A with sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS18470 and RR42_RS18475 are separated by 223 nucleotidesRR42_RS18475 and RR42_RS18480 are separated by 126 nucleotides RR42_RS18470: RR42_RS18470 - peptide chain release factor 1, at 3,999,038 to 4,000,120 _RS18470 RR42_RS18475: RR42_RS18475 - membrane protein, at 4,000,344 to 4,000,670 _RS18475 RR42_RS18480: RR42_RS18480 - SAM-dependent methyltransferase, at 4,000,797 to 4,001,714 _RS18480 Position (kb) 4000 4001Strain fitness (log2 ratio) -2 -1 0 1at 4000.132 kb on + strandat 4000.132 kb on + strandat 4000.132 kb on + strandat 4000.141 kb on - strandat 4000.164 kb on - strandat 4000.190 kb on + strandat 4000.190 kb on + strandat 4000.190 kb on + strandat 4000.220 kb on + strandat 4000.221 kb on - strandat 4000.221 kb on - strandat 4000.229 kb on + strandat 4000.273 kb on - strandat 4000.296 kb on - strandat 4000.604 kb on + strand, within RR42_RS18475at 4000.605 kb on - strand, within RR42_RS18475at 4000.605 kb on - strand, within RR42_RS18475at 4000.668 kb on + strandat 4000.668 kb on + strandat 4000.669 kb on - strandat 4000.739 kb on + strandat 4000.739 kb on + strandat 4000.739 kb on + strandat 4000.740 kb on - strandat 4000.740 kb on - strandat 4000.740 kb on - strandat 4000.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM
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4,000,132 + -0.7
4,000,132 + +0.9
4,000,132 + -0.3
4,000,141 - +0.1
4,000,164 - +0.2
4,000,190 + -0.1
4,000,190 + -0.5
4,000,190 + -0.9
4,000,220 + -0.2
4,000,221 - -0.6
4,000,221 - +0.2
4,000,229 + +0.2
4,000,273 - +0.1
4,000,296 - -1.2
4,000,604 + RR42_RS18475 0.80 -0.9
4,000,605 - RR42_RS18475 0.80 -1.1
4,000,605 - RR42_RS18475 0.80 -1.0
4,000,668 + +1.3
4,000,668 + -1.8
4,000,669 - +0.2
4,000,739 + -0.2
4,000,739 + -0.3
4,000,739 + -1.2
4,000,740 - -0.3
4,000,740 - -0.1
4,000,740 - +0.1
4,000,740 - -0.6

Or see this region's nucleotide sequence