Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16440

Experiment: R2A with sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16435 and RR42_RS16440 are separated by 52 nucleotidesRR42_RS16440 and RR42_RS16445 are separated by 44 nucleotidesRR42_RS16445 and RR42_RS16450 are separated by 98 nucleotides RR42_RS16435: RR42_RS16435 - hypothetical protein, at 3,557,516 to 3,558,520 _RS16435 RR42_RS16440: RR42_RS16440 - dihydropyrimidinase, at 3,558,573 to 3,560,009 _RS16440 RR42_RS16445: RR42_RS16445 - hypothetical protein, at 3,560,054 to 3,560,812 _RS16445 RR42_RS16450: RR42_RS16450 - hypothetical protein, at 3,560,911 to 3,561,543 _RS16450 Position (kb) 3558 3559 3560 3561Strain fitness (log2 ratio) -1 0 1 2at 3557.712 kb on + strand, within RR42_RS16435at 3557.716 kb on + strand, within RR42_RS16435at 3557.716 kb on + strand, within RR42_RS16435at 3557.727 kb on + strand, within RR42_RS16435at 3557.935 kb on + strand, within RR42_RS16435at 3557.935 kb on + strand, within RR42_RS16435at 3558.002 kb on + strand, within RR42_RS16435at 3558.058 kb on - strand, within RR42_RS16435at 3558.073 kb on - strand, within RR42_RS16435at 3558.142 kb on - strand, within RR42_RS16435at 3558.239 kb on + strand, within RR42_RS16435at 3558.620 kb on + strandat 3558.620 kb on + strandat 3558.723 kb on + strand, within RR42_RS16440at 3558.723 kb on + strand, within RR42_RS16440at 3558.785 kb on + strand, within RR42_RS16440at 3558.785 kb on + strand, within RR42_RS16440at 3558.785 kb on + strand, within RR42_RS16440at 3558.786 kb on - strand, within RR42_RS16440at 3558.786 kb on - strand, within RR42_RS16440at 3559.105 kb on - strand, within RR42_RS16440at 3559.150 kb on + strand, within RR42_RS16440at 3559.150 kb on + strand, within RR42_RS16440at 3559.150 kb on + strand, within RR42_RS16440at 3559.284 kb on + strand, within RR42_RS16440at 3559.537 kb on + strand, within RR42_RS16440at 3559.537 kb on + strand, within RR42_RS16440at 3559.547 kb on - strand, within RR42_RS16440at 3559.642 kb on + strand, within RR42_RS16440at 3559.776 kb on - strand, within RR42_RS16440at 3559.932 kb on + strandat 3559.989 kb on + strandat 3560.112 kb on - strandat 3560.280 kb on - strand, within RR42_RS16445at 3560.382 kb on + strand, within RR42_RS16445at 3560.391 kb on + strand, within RR42_RS16445at 3560.391 kb on + strand, within RR42_RS16445at 3560.392 kb on - strand, within RR42_RS16445at 3560.672 kb on - strand, within RR42_RS16445at 3560.802 kb on - strandat 3560.802 kb on - strandat 3560.957 kb on + strandat 3561.008 kb on + strand, within RR42_RS16450

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM
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3,557,712 + RR42_RS16435 0.20 +0.3
3,557,716 + RR42_RS16435 0.20 -0.0
3,557,716 + RR42_RS16435 0.20 -1.4
3,557,727 + RR42_RS16435 0.21 +0.4
3,557,935 + RR42_RS16435 0.42 +0.2
3,557,935 + RR42_RS16435 0.42 -0.2
3,558,002 + RR42_RS16435 0.48 -1.5
3,558,058 - RR42_RS16435 0.54 +0.8
3,558,073 - RR42_RS16435 0.55 +0.4
3,558,142 - RR42_RS16435 0.62 +2.0
3,558,239 + RR42_RS16435 0.72 +0.3
3,558,620 + -0.9
3,558,620 + +0.4
3,558,723 + RR42_RS16440 0.10 -0.1
3,558,723 + RR42_RS16440 0.10 -0.2
3,558,785 + RR42_RS16440 0.15 +0.5
3,558,785 + RR42_RS16440 0.15 +0.0
3,558,785 + RR42_RS16440 0.15 +0.0
3,558,786 - RR42_RS16440 0.15 +0.0
3,558,786 - RR42_RS16440 0.15 -0.7
3,559,105 - RR42_RS16440 0.37 -0.2
3,559,150 + RR42_RS16440 0.40 -0.3
3,559,150 + RR42_RS16440 0.40 -0.1
3,559,150 + RR42_RS16440 0.40 -1.2
3,559,284 + RR42_RS16440 0.49 -0.1
3,559,537 + RR42_RS16440 0.67 +0.5
3,559,537 + RR42_RS16440 0.67 -0.8
3,559,547 - RR42_RS16440 0.68 +0.2
3,559,642 + RR42_RS16440 0.74 -0.2
3,559,776 - RR42_RS16440 0.84 -0.3
3,559,932 + +0.3
3,559,989 + +0.0
3,560,112 - -0.6
3,560,280 - RR42_RS16445 0.30 -0.5
3,560,382 + RR42_RS16445 0.43 +0.4
3,560,391 + RR42_RS16445 0.44 -0.5
3,560,391 + RR42_RS16445 0.44 +0.5
3,560,392 - RR42_RS16445 0.45 +0.9
3,560,672 - RR42_RS16445 0.81 +0.4
3,560,802 - +2.0
3,560,802 - +0.2
3,560,957 + +0.4
3,561,008 + RR42_RS16450 0.15 -0.6

Or see this region's nucleotide sequence