Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12860

Experiment: R2A with sodium fluoride 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS12850 and RR42_RS12855 overlap by 4 nucleotidesRR42_RS12855 and RR42_RS12860 are separated by 330 nucleotidesRR42_RS12860 and RR42_RS12865 are separated by 5 nucleotides RR42_RS12850: RR42_RS12850 - transcription termination factor NusA, at 2,761,977 to 2,763,452 _RS12850 RR42_RS12855: RR42_RS12855 - ribosome maturation protein RimP, at 2,763,449 to 2,763,937 _RS12855 RR42_RS12860: RR42_RS12860 - pseudouridine synthase, at 2,764,268 to 2,766,184 _RS12860 RR42_RS12865: RR42_RS12865 - SMC-Scp complex subunit ScpB, at 2,766,190 to 2,767,266 _RS12865 Position (kb) 2764 2765 2766 2767Strain fitness (log2 ratio) -1 0 1at 2764.493 kb on - strand, within RR42_RS12860at 2764.524 kb on + strand, within RR42_RS12860at 2766.296 kb on - strandat 2766.478 kb on - strand, within RR42_RS12865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM
remove
2,764,493 - RR42_RS12860 0.12 +1.1
2,764,524 + RR42_RS12860 0.13 +1.3
2,766,296 - -0.7
2,766,478 - RR42_RS12865 0.27 -0.1

Or see this region's nucleotide sequence