Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07535

Experiment: R2A with sodium fluoride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07530 and RR42_RS07535 are separated by 110 nucleotidesRR42_RS07535 and RR42_RS07540 are separated by 4 nucleotides RR42_RS07530: RR42_RS07530 - ABC transporter permease, at 1,609,529 to 1,610,710 _RS07530 RR42_RS07535: RR42_RS07535 - ABC transporter permease, at 1,610,821 to 1,611,687 _RS07535 RR42_RS07540: RR42_RS07540 - ABC transporter permease, at 1,611,692 to 1,612,717 _RS07540 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1609.961 kb on - strand, within RR42_RS07530at 1609.961 kb on - strand, within RR42_RS07530at 1610.061 kb on - strand, within RR42_RS07530at 1610.061 kb on - strand, within RR42_RS07530at 1610.291 kb on + strand, within RR42_RS07530at 1610.292 kb on - strand, within RR42_RS07530at 1610.292 kb on - strand, within RR42_RS07530at 1610.369 kb on + strand, within RR42_RS07530at 1610.429 kb on + strand, within RR42_RS07530at 1610.450 kb on + strand, within RR42_RS07530at 1610.450 kb on + strand, within RR42_RS07530at 1610.450 kb on + strand, within RR42_RS07530at 1610.450 kb on + strand, within RR42_RS07530at 1610.466 kb on - strand, within RR42_RS07530at 1610.716 kb on + strandat 1610.856 kb on + strandat 1610.856 kb on + strandat 1610.856 kb on + strandat 1610.866 kb on + strandat 1610.953 kb on + strand, within RR42_RS07535at 1610.953 kb on + strand, within RR42_RS07535at 1610.953 kb on + strand, within RR42_RS07535at 1610.953 kb on + strand, within RR42_RS07535at 1610.953 kb on + strand, within RR42_RS07535at 1610.953 kb on + strand, within RR42_RS07535at 1610.954 kb on - strand, within RR42_RS07535at 1610.954 kb on - strand, within RR42_RS07535at 1611.079 kb on + strand, within RR42_RS07535at 1611.080 kb on - strand, within RR42_RS07535at 1611.080 kb on - strand, within RR42_RS07535at 1611.080 kb on - strand, within RR42_RS07535at 1611.080 kb on - strand, within RR42_RS07535at 1611.085 kb on + strand, within RR42_RS07535at 1611.086 kb on - strand, within RR42_RS07535at 1611.121 kb on + strand, within RR42_RS07535at 1611.122 kb on - strand, within RR42_RS07535at 1611.176 kb on + strand, within RR42_RS07535at 1611.176 kb on + strand, within RR42_RS07535at 1611.176 kb on + strand, within RR42_RS07535at 1611.176 kb on + strand, within RR42_RS07535at 1611.176 kb on + strand, within RR42_RS07535at 1611.177 kb on - strand, within RR42_RS07535at 1611.177 kb on - strand, within RR42_RS07535at 1611.177 kb on - strand, within RR42_RS07535at 1611.239 kb on - strand, within RR42_RS07535at 1611.248 kb on - strand, within RR42_RS07535at 1611.295 kb on + strand, within RR42_RS07535at 1611.296 kb on - strand, within RR42_RS07535at 1611.296 kb on - strand, within RR42_RS07535at 1611.394 kb on + strand, within RR42_RS07535at 1611.583 kb on - strand, within RR42_RS07535at 1611.629 kb on - strandat 1611.704 kb on - strandat 1611.807 kb on + strand, within RR42_RS07540at 1611.808 kb on - strand, within RR42_RS07540at 1611.906 kb on - strand, within RR42_RS07540at 1611.938 kb on + strand, within RR42_RS07540at 1612.007 kb on - strand, within RR42_RS07540at 1612.085 kb on + strand, within RR42_RS07540at 1612.085 kb on + strand, within RR42_RS07540at 1612.099 kb on + strand, within RR42_RS07540at 1612.124 kb on + strand, within RR42_RS07540at 1612.124 kb on + strand, within RR42_RS07540at 1612.124 kb on + strand, within RR42_RS07540at 1612.124 kb on - strand, within RR42_RS07540at 1612.125 kb on - strand, within RR42_RS07540at 1612.125 kb on - strand, within RR42_RS07540at 1612.125 kb on - strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.172 kb on + strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.173 kb on - strand, within RR42_RS07540at 1612.174 kb on + strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.175 kb on - strand, within RR42_RS07540at 1612.179 kb on - strand, within RR42_RS07540at 1612.179 kb on - strand, within RR42_RS07540at 1612.244 kb on + strand, within RR42_RS07540at 1612.245 kb on - strand, within RR42_RS07540at 1612.294 kb on - strand, within RR42_RS07540at 1612.340 kb on - strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.376 kb on + strand, within RR42_RS07540at 1612.377 kb on - strand, within RR42_RS07540at 1612.377 kb on - strand, within RR42_RS07540at 1612.434 kb on - strand, within RR42_RS07540at 1612.439 kb on + strand, within RR42_RS07540at 1612.439 kb on + strand, within RR42_RS07540at 1612.439 kb on + strand, within RR42_RS07540at 1612.440 kb on - strand, within RR42_RS07540at 1612.440 kb on - strand, within RR42_RS07540

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM
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1,609,961 - RR42_RS07530 0.37 +0.0
1,609,961 - RR42_RS07530 0.37 -0.8
1,610,061 - RR42_RS07530 0.45 +0.4
1,610,061 - RR42_RS07530 0.45 +0.6
1,610,291 + RR42_RS07530 0.64 +0.3
1,610,292 - RR42_RS07530 0.65 -0.4
1,610,292 - RR42_RS07530 0.65 +0.6
1,610,369 + RR42_RS07530 0.71 -0.0
1,610,429 + RR42_RS07530 0.76 -0.7
1,610,450 + RR42_RS07530 0.78 +1.0
1,610,450 + RR42_RS07530 0.78 -1.0
1,610,450 + RR42_RS07530 0.78 -0.3
1,610,450 + RR42_RS07530 0.78 -0.7
1,610,466 - RR42_RS07530 0.79 -0.8
1,610,716 + -0.3
1,610,856 + +0.4
1,610,856 + -0.1
1,610,856 + -0.7
1,610,866 + +0.3
1,610,953 + RR42_RS07535 0.15 +0.8
1,610,953 + RR42_RS07535 0.15 +0.3
1,610,953 + RR42_RS07535 0.15 +0.1
1,610,953 + RR42_RS07535 0.15 +2.1
1,610,953 + RR42_RS07535 0.15 +0.1
1,610,953 + RR42_RS07535 0.15 +0.0
1,610,954 - RR42_RS07535 0.15 -0.1
1,610,954 - RR42_RS07535 0.15 -0.8
1,611,079 + RR42_RS07535 0.30 +0.2
1,611,080 - RR42_RS07535 0.30 +0.5
1,611,080 - RR42_RS07535 0.30 +0.1
1,611,080 - RR42_RS07535 0.30 -0.2
1,611,080 - RR42_RS07535 0.30 +0.3
1,611,085 + RR42_RS07535 0.30 -0.0
1,611,086 - RR42_RS07535 0.31 -0.4
1,611,121 + RR42_RS07535 0.35 -0.1
1,611,122 - RR42_RS07535 0.35 -0.3
1,611,176 + RR42_RS07535 0.41 -0.2
1,611,176 + RR42_RS07535 0.41 +0.7
1,611,176 + RR42_RS07535 0.41 +1.1
1,611,176 + RR42_RS07535 0.41 -3.0
1,611,176 + RR42_RS07535 0.41 -0.2
1,611,177 - RR42_RS07535 0.41 +0.2
1,611,177 - RR42_RS07535 0.41 +0.3
1,611,177 - RR42_RS07535 0.41 -0.0
1,611,239 - RR42_RS07535 0.48 +0.6
1,611,248 - RR42_RS07535 0.49 +0.1
1,611,295 + RR42_RS07535 0.55 +1.6
1,611,296 - RR42_RS07535 0.55 -0.1
1,611,296 - RR42_RS07535 0.55 -1.2
1,611,394 + RR42_RS07535 0.66 +0.0
1,611,583 - RR42_RS07535 0.88 -0.4
1,611,629 - +0.4
1,611,704 - -0.8
1,611,807 + RR42_RS07540 0.11 -0.4
1,611,808 - RR42_RS07540 0.11 -0.4
1,611,906 - RR42_RS07540 0.21 -2.2
1,611,938 + RR42_RS07540 0.24 -0.1
1,612,007 - RR42_RS07540 0.31 -1.0
1,612,085 + RR42_RS07540 0.38 +0.0
1,612,085 + RR42_RS07540 0.38 -0.1
1,612,099 + RR42_RS07540 0.40 +0.4
1,612,124 + RR42_RS07540 0.42 +0.7
1,612,124 + RR42_RS07540 0.42 +0.7
1,612,124 + RR42_RS07540 0.42 -0.5
1,612,124 - RR42_RS07540 0.42 +0.7
1,612,125 - RR42_RS07540 0.42 -0.6
1,612,125 - RR42_RS07540 0.42 +1.1
1,612,125 - RR42_RS07540 0.42 -0.9
1,612,172 + RR42_RS07540 0.47 +0.2
1,612,172 + RR42_RS07540 0.47 +0.3
1,612,172 + RR42_RS07540 0.47 -0.6
1,612,172 + RR42_RS07540 0.47 +0.1
1,612,172 + RR42_RS07540 0.47 +1.0
1,612,172 + RR42_RS07540 0.47 -0.2
1,612,172 + RR42_RS07540 0.47 +0.0
1,612,172 + RR42_RS07540 0.47 -0.2
1,612,173 - RR42_RS07540 0.47 -0.5
1,612,173 - RR42_RS07540 0.47 -0.2
1,612,173 - RR42_RS07540 0.47 +1.0
1,612,173 - RR42_RS07540 0.47 +0.1
1,612,173 - RR42_RS07540 0.47 -0.2
1,612,173 - RR42_RS07540 0.47 -0.1
1,612,173 - RR42_RS07540 0.47 -0.8
1,612,174 + RR42_RS07540 0.47 +0.4
1,612,175 - RR42_RS07540 0.47 +0.5
1,612,175 - RR42_RS07540 0.47 +0.3
1,612,175 - RR42_RS07540 0.47 +0.4
1,612,175 - RR42_RS07540 0.47 +1.5
1,612,175 - RR42_RS07540 0.47 +0.1
1,612,175 - RR42_RS07540 0.47 +0.4
1,612,179 - RR42_RS07540 0.47 -0.4
1,612,179 - RR42_RS07540 0.47 -1.0
1,612,244 + RR42_RS07540 0.54 -0.1
1,612,245 - RR42_RS07540 0.54 -0.1
1,612,294 - RR42_RS07540 0.59 -0.1
1,612,340 - RR42_RS07540 0.63 -2.1
1,612,376 + RR42_RS07540 0.67 +0.7
1,612,376 + RR42_RS07540 0.67 +0.5
1,612,376 + RR42_RS07540 0.67 -0.0
1,612,376 + RR42_RS07540 0.67 -0.2
1,612,376 + RR42_RS07540 0.67 +1.0
1,612,376 + RR42_RS07540 0.67 +0.2
1,612,377 - RR42_RS07540 0.67 +0.6
1,612,377 - RR42_RS07540 0.67 -0.1
1,612,434 - RR42_RS07540 0.72 -0.6
1,612,439 + RR42_RS07540 0.73 -0.4
1,612,439 + RR42_RS07540 0.73 -0.6
1,612,439 + RR42_RS07540 0.73 -0.6
1,612,440 - RR42_RS07540 0.73 -0.3
1,612,440 - RR42_RS07540 0.73 -0.8

Or see this region's nucleotide sequence