Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04265

Experiment: R2A with sodium fluoride 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS04260 and RR42_RS04265 are separated by 85 nucleotidesRR42_RS04265 and RR42_RS04270 are separated by 476 nucleotides RR42_RS04260: RR42_RS04260 - chemotaxis protein, at 941,179 to 943,347 _RS04260 RR42_RS04265: RR42_RS04265 - chemotaxis protein CheY, at 943,433 to 949,480 _RS04265 RR42_RS04270: RR42_RS04270 - MFS transporter, at 949,957 to 951,261 _RS04270 Position (kb) 943 944 945 946 947 948 949 950Strain fitness (log2 ratio) -2 -1 0 1 2at 942.478 kb on + strand, within RR42_RS04260at 942.478 kb on + strand, within RR42_RS04260at 942.479 kb on - strand, within RR42_RS04260at 942.479 kb on - strand, within RR42_RS04260at 942.479 kb on - strand, within RR42_RS04260at 942.479 kb on - strand, within RR42_RS04260at 943.200 kb on + strandat 943.218 kb on + strandat 943.219 kb on - strandat 943.317 kb on + strandat 943.756 kb on - strandat 943.782 kb on - strandat 943.889 kb on + strandat 943.890 kb on - strandat 944.153 kb on + strand, within RR42_RS04265at 944.153 kb on + strand, within RR42_RS04265at 944.153 kb on + strand, within RR42_RS04265at 944.153 kb on + strand, within RR42_RS04265at 944.185 kb on - strand, within RR42_RS04265at 944.397 kb on - strand, within RR42_RS04265at 944.547 kb on - strand, within RR42_RS04265at 944.549 kb on + strand, within RR42_RS04265at 944.549 kb on + strand, within RR42_RS04265at 944.550 kb on - strand, within RR42_RS04265at 944.550 kb on - strand, within RR42_RS04265at 944.648 kb on - strand, within RR42_RS04265at 944.876 kb on + strand, within RR42_RS04265at 944.876 kb on + strand, within RR42_RS04265at 944.877 kb on - strand, within RR42_RS04265at 944.877 kb on - strand, within RR42_RS04265at 944.877 kb on - strand, within RR42_RS04265at 945.029 kb on + strand, within RR42_RS04265at 945.030 kb on - strand, within RR42_RS04265at 945.370 kb on + strand, within RR42_RS04265at 945.370 kb on + strand, within RR42_RS04265at 945.371 kb on - strand, within RR42_RS04265at 945.371 kb on - strand, within RR42_RS04265at 945.371 kb on - strand, within RR42_RS04265at 945.371 kb on - strand, within RR42_RS04265at 945.598 kb on + strand, within RR42_RS04265at 945.599 kb on - strand, within RR42_RS04265at 945.760 kb on + strand, within RR42_RS04265at 945.875 kb on - strand, within RR42_RS04265at 945.875 kb on - strand, within RR42_RS04265at 946.403 kb on + strand, within RR42_RS04265at 946.404 kb on - strand, within RR42_RS04265at 946.413 kb on - strand, within RR42_RS04265at 946.937 kb on - strand, within RR42_RS04265at 947.246 kb on + strand, within RR42_RS04265at 947.275 kb on + strand, within RR42_RS04265at 947.276 kb on - strand, within RR42_RS04265at 947.276 kb on - strand, within RR42_RS04265at 947.439 kb on + strand, within RR42_RS04265at 947.439 kb on + strand, within RR42_RS04265at 947.440 kb on - strand, within RR42_RS04265at 947.581 kb on + strand, within RR42_RS04265at 947.658 kb on - strand, within RR42_RS04265at 947.993 kb on + strand, within RR42_RS04265at 948.036 kb on + strand, within RR42_RS04265at 948.133 kb on - strand, within RR42_RS04265at 948.520 kb on + strand, within RR42_RS04265at 948.521 kb on - strand, within RR42_RS04265at 948.624 kb on - strand, within RR42_RS04265at 948.722 kb on + strand, within RR42_RS04265at 948.722 kb on + strand, within RR42_RS04265at 948.723 kb on - strand, within RR42_RS04265at 948.890 kb on + strandat 948.891 kb on - strandat 948.891 kb on - strandat 949.228 kb on + strandat 949.228 kb on + strandat 949.229 kb on - strandat 949.229 kb on - strandat 949.229 kb on - strandat 949.282 kb on + strandat 949.282 kb on + strandat 949.282 kb on + strandat 949.359 kb on - strandat 949.373 kb on + strandat 949.373 kb on + strandat 949.373 kb on + strandat 949.373 kb on + strandat 949.773 kb on + strandat 949.773 kb on + strandat 949.773 kb on + strandat 949.959 kb on - strandat 950.031 kb on - strandat 950.243 kb on + strand, within RR42_RS04270at 950.244 kb on + strand, within RR42_RS04270at 950.244 kb on + strand, within RR42_RS04270at 950.245 kb on - strand, within RR42_RS04270at 950.343 kb on - strand, within RR42_RS04270at 950.379 kb on - strand, within RR42_RS04270at 950.465 kb on + strand, within RR42_RS04270at 950.466 kb on - strand, within RR42_RS04270

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM
remove
942,478 + RR42_RS04260 0.60 +1.1
942,478 + RR42_RS04260 0.60 -0.4
942,479 - RR42_RS04260 0.60 +1.8
942,479 - RR42_RS04260 0.60 +0.2
942,479 - RR42_RS04260 0.60 +0.3
942,479 - RR42_RS04260 0.60 +0.7
943,200 + -1.2
943,218 + -0.2
943,219 - +0.7
943,317 + +0.9
943,756 - -0.4
943,782 - +0.0
943,889 + +1.0
943,890 - +0.5
944,153 + RR42_RS04265 0.12 +0.3
944,153 + RR42_RS04265 0.12 +1.9
944,153 + RR42_RS04265 0.12 +0.8
944,153 + RR42_RS04265 0.12 +1.3
944,185 - RR42_RS04265 0.12 +0.6
944,397 - RR42_RS04265 0.16 +0.7
944,547 - RR42_RS04265 0.18 -0.3
944,549 + RR42_RS04265 0.18 -0.1
944,549 + RR42_RS04265 0.18 +0.5
944,550 - RR42_RS04265 0.18 +1.0
944,550 - RR42_RS04265 0.18 +1.7
944,648 - RR42_RS04265 0.20 +0.5
944,876 + RR42_RS04265 0.24 +1.5
944,876 + RR42_RS04265 0.24 -0.1
944,877 - RR42_RS04265 0.24 +0.5
944,877 - RR42_RS04265 0.24 +0.1
944,877 - RR42_RS04265 0.24 +1.0
945,029 + RR42_RS04265 0.26 +0.5
945,030 - RR42_RS04265 0.26 +0.3
945,370 + RR42_RS04265 0.32 +0.9
945,370 + RR42_RS04265 0.32 -1.2
945,371 - RR42_RS04265 0.32 +0.6
945,371 - RR42_RS04265 0.32 -1.1
945,371 - RR42_RS04265 0.32 +0.7
945,371 - RR42_RS04265 0.32 -0.1
945,598 + RR42_RS04265 0.36 +1.1
945,599 - RR42_RS04265 0.36 +0.8
945,760 + RR42_RS04265 0.38 -0.1
945,875 - RR42_RS04265 0.40 +1.3
945,875 - RR42_RS04265 0.40 -0.3
946,403 + RR42_RS04265 0.49 +0.6
946,404 - RR42_RS04265 0.49 +1.3
946,413 - RR42_RS04265 0.49 -0.9
946,937 - RR42_RS04265 0.58 +0.4
947,246 + RR42_RS04265 0.63 +0.7
947,275 + RR42_RS04265 0.64 -0.4
947,276 - RR42_RS04265 0.64 +1.2
947,276 - RR42_RS04265 0.64 -0.6
947,439 + RR42_RS04265 0.66 -0.2
947,439 + RR42_RS04265 0.66 -0.1
947,440 - RR42_RS04265 0.66 -0.4
947,581 + RR42_RS04265 0.69 +0.2
947,658 - RR42_RS04265 0.70 +0.3
947,993 + RR42_RS04265 0.75 -1.2
948,036 + RR42_RS04265 0.76 +0.3
948,133 - RR42_RS04265 0.78 -2.2
948,520 + RR42_RS04265 0.84 -0.8
948,521 - RR42_RS04265 0.84 -0.1
948,624 - RR42_RS04265 0.86 +1.1
948,722 + RR42_RS04265 0.87 +0.1
948,722 + RR42_RS04265 0.87 +0.5
948,723 - RR42_RS04265 0.87 +1.2
948,890 + +0.3
948,891 - +0.6
948,891 - +0.4
949,228 + +1.5
949,228 + -0.4
949,229 - -0.4
949,229 - -0.3
949,229 - -0.6
949,282 + +0.1
949,282 + +0.6
949,282 + -0.1
949,359 - -0.5
949,373 + -0.6
949,373 + -0.2
949,373 + +0.0
949,373 + -0.1
949,773 + -0.1
949,773 + -0.2
949,773 + +0.2
949,959 - -0.4
950,031 - -0.3
950,243 + RR42_RS04270 0.22 +0.5
950,244 + RR42_RS04270 0.22 -0.9
950,244 + RR42_RS04270 0.22 +0.6
950,245 - RR42_RS04270 0.22 -0.4
950,343 - RR42_RS04270 0.30 +0.3
950,379 - RR42_RS04270 0.32 +1.0
950,465 + RR42_RS04270 0.39 +0.2
950,466 - RR42_RS04270 0.39 +0.2

Or see this region's nucleotide sequence