Experiment: R2A with sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01865 and RR42_RS01870 are separated by 265 nucleotides RR42_RS01870 and RR42_RS01875 are separated by 57 nucleotides
RR42_RS01865: RR42_RS01865 - amidophosphoribosyltransferase, at 420,803 to 421,816
_RS01865
RR42_RS01870: RR42_RS01870 - membrane protein, at 422,082 to 422,591
_RS01870
RR42_RS01875: RR42_RS01875 - cytochrome C oxidase subunit II, at 422,649 to 423,911
_RS01875
Position (kb) 422
423 Strain fitness (log2 ratio) -2
-1
0
1 at 421.814 kb on + strand at 421.814 kb on + strand at 421.920 kb on + strand at 421.921 kb on - strand at 421.952 kb on - strand at 421.952 kb on - strand at 421.953 kb on + strand at 422.059 kb on + strand at 422.059 kb on + strand at 422.060 kb on - strand at 422.060 kb on - strand at 422.217 kb on + strand, within RR42_RS01870 at 422.217 kb on + strand, within RR42_RS01870 at 422.218 kb on - strand, within RR42_RS01870 at 422.359 kb on - strand, within RR42_RS01870 at 422.392 kb on + strand, within RR42_RS01870 at 422.392 kb on + strand, within RR42_RS01870 at 422.538 kb on + strand, within RR42_RS01870 at 422.538 kb on + strand, within RR42_RS01870 at 422.539 kb on - strand, within RR42_RS01870 at 422.539 kb on - strand, within RR42_RS01870 at 422.631 kb on - strand at 422.643 kb on + strand at 422.643 kb on + strand at 422.872 kb on - strand, within RR42_RS01875 at 422.872 kb on - strand, within RR42_RS01875 at 423.078 kb on + strand, within RR42_RS01875 at 423.177 kb on + strand, within RR42_RS01875 at 423.177 kb on + strand, within RR42_RS01875 at 423.177 kb on + strand, within RR42_RS01875 at 423.178 kb on - strand, within RR42_RS01875 at 423.432 kb on + strand, within RR42_RS01875 at 423.570 kb on - strand, within RR42_RS01875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM remove 421,814 + -0.0 421,814 + -0.0 421,920 + -0.1 421,921 - -0.0 421,952 - -1.0 421,952 - -0.6 421,953 + -0.9 422,059 + +0.4 422,059 + -0.6 422,060 - +0.2 422,060 - -1.4 422,217 + RR42_RS01870 0.26 +0.6 422,217 + RR42_RS01870 0.26 -1.7 422,218 - RR42_RS01870 0.27 -1.3 422,359 - RR42_RS01870 0.54 -1.5 422,392 + RR42_RS01870 0.61 -0.4 422,392 + RR42_RS01870 0.61 -0.5 422,538 + RR42_RS01870 0.89 -1.3 422,538 + RR42_RS01870 0.89 -0.2 422,539 - RR42_RS01870 0.90 -1.3 422,539 - RR42_RS01870 0.90 -1.6 422,631 - -1.1 422,643 + +0.0 422,643 + -1.7 422,872 - RR42_RS01875 0.18 -2.2 422,872 - RR42_RS01875 0.18 +0.3 423,078 + RR42_RS01875 0.34 -0.7 423,177 + RR42_RS01875 0.42 -0.7 423,177 + RR42_RS01875 0.42 -0.4 423,177 + RR42_RS01875 0.42 -1.4 423,178 - RR42_RS01875 0.42 -1.4 423,432 + RR42_RS01875 0.62 -0.4 423,570 - RR42_RS01875 0.73 -1.3
Or see this region's nucleotide sequence