Experiment: R2A with sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01090 and RR42_RS01095 are separated by 214 nucleotides RR42_RS01095 and RR42_RS01100 are separated by 35 nucleotides
RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676
_RS01090
RR42_RS01095: RR42_RS01095 - membrane protein, at 255,891 to 256,370
_RS01095
RR42_RS01100: RR42_RS01100 - LysR family transcriptional regulator, at 256,406 to 257,341
_RS01100
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1 at 255.150 kb on + strand, within RR42_RS01090 at 255.150 kb on + strand, within RR42_RS01090 at 255.151 kb on - strand, within RR42_RS01090 at 255.151 kb on - strand, within RR42_RS01090 at 255.192 kb on + strand, within RR42_RS01090 at 255.192 kb on + strand, within RR42_RS01090 at 255.193 kb on - strand, within RR42_RS01090 at 255.193 kb on - strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.213 kb on + strand, within RR42_RS01090 at 255.214 kb on - strand, within RR42_RS01090 at 255.229 kb on - strand, within RR42_RS01090 at 255.294 kb on + strand, within RR42_RS01090 at 255.295 kb on - strand, within RR42_RS01090 at 255.670 kb on + strand at 255.671 kb on - strand at 255.688 kb on - strand at 255.688 kb on - strand at 255.844 kb on - strand at 255.844 kb on - strand at 255.856 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 255.884 kb on - strand at 256.074 kb on - strand, within RR42_RS01095 at 256.394 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.407 kb on + strand at 256.408 kb on - strand at 256.480 kb on + strand at 256.480 kb on + strand at 256.481 kb on - strand at 256.830 kb on + strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 256.831 kb on - strand, within RR42_RS01100 at 257.025 kb on + strand, within RR42_RS01100 at 257.026 kb on - strand, within RR42_RS01100 at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.273 kb on - strand at 257.350 kb on + strand at 257.350 kb on + strand at 257.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM remove 255,150 + RR42_RS01090 0.62 +0.2 255,150 + RR42_RS01090 0.62 -1.7 255,151 - RR42_RS01090 0.63 -1.0 255,151 - RR42_RS01090 0.63 -1.5 255,192 + RR42_RS01090 0.65 +0.5 255,192 + RR42_RS01090 0.65 -0.4 255,193 - RR42_RS01090 0.66 -0.6 255,193 - RR42_RS01090 0.66 +0.1 255,213 + RR42_RS01090 0.67 -1.0 255,213 + RR42_RS01090 0.67 -1.5 255,213 + RR42_RS01090 0.67 -1.1 255,213 + RR42_RS01090 0.67 -0.6 255,214 - RR42_RS01090 0.67 -0.4 255,229 - RR42_RS01090 0.68 -1.3 255,294 + RR42_RS01090 0.73 -1.0 255,295 - RR42_RS01090 0.73 -0.4 255,670 + +1.1 255,671 - -0.5 255,688 - -0.6 255,688 - -1.4 255,844 - -0.7 255,844 - -0.2 255,856 - -1.8 255,884 - -0.3 255,884 - -0.8 255,884 - -2.2 255,884 - -1.6 256,074 - RR42_RS01095 0.38 -0.3 256,394 + -0.1 256,407 + -0.2 256,407 + -0.5 256,407 + +0.0 256,408 - -0.2 256,480 + -1.0 256,480 + +0.9 256,481 - +0.2 256,830 + RR42_RS01100 0.45 +0.3 256,831 - RR42_RS01100 0.45 -1.5 256,831 - RR42_RS01100 0.45 +0.3 257,025 + RR42_RS01100 0.66 +0.6 257,026 - RR42_RS01100 0.66 -1.1 257,273 - +0.2 257,273 - -1.2 257,273 - -0.4 257,273 - -0.1 257,350 + +0.1 257,350 + -0.7 257,360 - +0.9
Or see this region's nucleotide sequence