Experiment: R2A with sodium fluoride 100 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00140 and RR42_RS00145 are separated by 118 nucleotides RR42_RS00145 and RR42_RS00150 are separated by 93 nucleotides
RR42_RS00140: RR42_RS00140 - peptide transporter, at 42,537 to 44,339
_RS00140
RR42_RS00145: RR42_RS00145 - hypothetical protein, at 44,458 to 45,264
_RS00145
RR42_RS00150: RR42_RS00150 - hemagglutinin, at 45,358 to 52,287
_RS00150
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1
2 at 43.516 kb on - strand, within RR42_RS00140 at 43.516 kb on - strand, within RR42_RS00140 at 43.518 kb on - strand, within RR42_RS00140 at 43.569 kb on + strand, within RR42_RS00140 at 43.570 kb on - strand, within RR42_RS00140 at 43.660 kb on - strand, within RR42_RS00140 at 43.773 kb on + strand, within RR42_RS00140 at 43.774 kb on - strand, within RR42_RS00140 at 43.925 kb on + strand, within RR42_RS00140 at 44.001 kb on + strand, within RR42_RS00140 at 44.002 kb on - strand, within RR42_RS00140 at 44.067 kb on + strand, within RR42_RS00140 at 44.068 kb on - strand, within RR42_RS00140 at 44.068 kb on - strand, within RR42_RS00140 at 44.068 kb on - strand, within RR42_RS00140 at 44.130 kb on + strand, within RR42_RS00140 at 44.130 kb on + strand, within RR42_RS00140 at 44.334 kb on + strand at 44.335 kb on - strand at 44.335 kb on - strand at 44.335 kb on - strand at 44.348 kb on + strand at 44.348 kb on + strand at 44.349 kb on - strand at 44.349 kb on - strand at 44.362 kb on + strand at 44.363 kb on - strand at 44.363 kb on - strand at 44.435 kb on - strand at 44.471 kb on + strand at 44.760 kb on + strand, within RR42_RS00145 at 44.760 kb on + strand, within RR42_RS00145 at 44.804 kb on - strand, within RR42_RS00145 at 44.839 kb on + strand, within RR42_RS00145 at 44.839 kb on + strand, within RR42_RS00145 at 44.839 kb on + strand, within RR42_RS00145 at 44.840 kb on - strand, within RR42_RS00145 at 44.840 kb on - strand, within RR42_RS00145 at 45.154 kb on + strand, within RR42_RS00145 at 45.263 kb on - strand at 45.309 kb on - strand at 45.361 kb on + strand at 45.362 kb on - strand at 45.362 kb on - strand at 45.362 kb on - strand at 45.362 kb on - strand at 45.362 kb on - strand at 45.362 kb on - strand at 45.612 kb on + strand at 45.612 kb on + strand at 45.613 kb on - strand at 45.850 kb on + strand at 46.078 kb on + strand, within RR42_RS00150 at 46.078 kb on + strand, within RR42_RS00150 at 46.079 kb on - strand, within RR42_RS00150 at 46.079 kb on - strand, within RR42_RS00150 at 46.079 kb on - strand, within RR42_RS00150 at 46.079 kb on - strand, within RR42_RS00150 at 46.081 kb on - strand, within RR42_RS00150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with sodium fluoride 100 mM remove 43,516 - RR42_RS00140 0.54 +2.3 43,516 - RR42_RS00140 0.54 +0.2 43,518 - RR42_RS00140 0.54 -0.9 43,569 + RR42_RS00140 0.57 -1.4 43,570 - RR42_RS00140 0.57 -0.3 43,660 - RR42_RS00140 0.62 +0.3 43,773 + RR42_RS00140 0.69 +0.5 43,774 - RR42_RS00140 0.69 +0.4 43,925 + RR42_RS00140 0.77 -0.4 44,001 + RR42_RS00140 0.81 -0.5 44,002 - RR42_RS00140 0.81 +0.8 44,067 + RR42_RS00140 0.85 -0.1 44,068 - RR42_RS00140 0.85 +0.7 44,068 - RR42_RS00140 0.85 +0.3 44,068 - RR42_RS00140 0.85 +0.1 44,130 + RR42_RS00140 0.88 +1.6 44,130 + RR42_RS00140 0.88 -0.6 44,334 + +0.3 44,335 - +0.1 44,335 - +0.2 44,335 - +0.3 44,348 + +0.4 44,348 + -0.9 44,349 - -0.2 44,349 - -0.0 44,362 + -0.1 44,363 - -0.8 44,363 - +0.4 44,435 - -1.0 44,471 + -0.6 44,760 + RR42_RS00145 0.37 -1.6 44,760 + RR42_RS00145 0.37 -1.0 44,804 - RR42_RS00145 0.43 -0.5 44,839 + RR42_RS00145 0.47 -0.7 44,839 + RR42_RS00145 0.47 -1.1 44,839 + RR42_RS00145 0.47 +0.3 44,840 - RR42_RS00145 0.47 -0.1 44,840 - RR42_RS00145 0.47 -0.6 45,154 + RR42_RS00145 0.86 -0.3 45,263 - +1.3 45,309 - +0.6 45,361 + +0.2 45,362 - +0.6 45,362 - +0.3 45,362 - +0.5 45,362 - +0.0 45,362 - +0.4 45,362 - +1.1 45,612 + -0.2 45,612 + -0.3 45,613 - +0.8 45,850 + -0.0 46,078 + RR42_RS00150 0.10 -0.8 46,078 + RR42_RS00150 0.10 +1.1 46,079 - RR42_RS00150 0.10 -0.0 46,079 - RR42_RS00150 0.10 -0.6 46,079 - RR42_RS00150 0.10 +0.1 46,079 - RR42_RS00150 0.10 -0.4 46,081 - RR42_RS00150 0.10 +0.1
Or see this region's nucleotide sequence