Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5596 and Pf1N1B4_5597 are separated by 130 nucleotides Pf1N1B4_5597 and Pf1N1B4_5598 are separated by 152 nucleotides Pf1N1B4_5598 and Pf1N1B4_5599 are separated by 307 nucleotides
Pf1N1B4_5596 - Putative hydroxycinnamate transporter, at 18,620 to 19,837
_5596
Pf1N1B4_5597 - FIG005548: transport protein, at 19,968 to 21,125
_5597
Pf1N1B4_5598 - hypothetical protein, at 21,278 to 21,475
_5598
Pf1N1B4_5599 - transcriptional regulator, TetR family, at 21,783 to 22,394
_5599
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.037 kb on + strand, within Pf1N1B4_5596 at 19.286 kb on + strand, within Pf1N1B4_5596 at 19.286 kb on + strand, within Pf1N1B4_5596 at 19.310 kb on + strand, within Pf1N1B4_5596 at 19.310 kb on + strand at 19.310 kb on + strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.311 kb on - strand, within Pf1N1B4_5596 at 19.475 kb on + strand, within Pf1N1B4_5596 at 19.475 kb on + strand, within Pf1N1B4_5596 at 20.190 kb on + strand, within Pf1N1B4_5597 at 20.190 kb on + strand, within Pf1N1B4_5597 at 20.282 kb on - strand, within Pf1N1B4_5597 at 20.451 kb on + strand at 20.471 kb on - strand, within Pf1N1B4_5597 at 20.648 kb on - strand, within Pf1N1B4_5597 at 20.648 kb on - strand, within Pf1N1B4_5597 at 20.746 kb on + strand, within Pf1N1B4_5597 at 20.747 kb on - strand, within Pf1N1B4_5597 at 21.094 kb on - strand at 21.210 kb on + strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.211 kb on - strand at 21.316 kb on - strand, within Pf1N1B4_5598 at 21.409 kb on - strand, within Pf1N1B4_5598 at 21.409 kb on - strand, within Pf1N1B4_5598 at 21.471 kb on + strand at 21.471 kb on + strand at 21.472 kb on - strand at 21.472 kb on - strand at 21.472 kb on - strand at 21.621 kb on + strand at 21.934 kb on - strand at 22.063 kb on + strand, within Pf1N1B4_5599 at 22.064 kb on - strand, within Pf1N1B4_5599
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 19,037 + Pf1N1B4_5596 0.34 +0.5 19,037 + Pf1N1B4_5596 0.34 -0.2 19,037 + Pf1N1B4_5596 0.34 +0.1 19,037 + Pf1N1B4_5596 0.34 -0.9 19,037 + Pf1N1B4_5596 0.34 -0.5 19,286 + Pf1N1B4_5596 0.55 -0.9 19,286 + Pf1N1B4_5596 0.55 -1.5 19,310 + Pf1N1B4_5596 0.57 -1.0 19,310 + -0.5 19,310 + Pf1N1B4_5596 0.57 -0.2 19,311 - Pf1N1B4_5596 0.57 +0.4 19,311 - Pf1N1B4_5596 0.57 -1.0 19,311 - Pf1N1B4_5596 0.57 -0.2 19,475 + Pf1N1B4_5596 0.70 +0.6 19,475 + Pf1N1B4_5596 0.70 -0.8 20,190 + Pf1N1B4_5597 0.19 -0.9 20,190 + Pf1N1B4_5597 0.19 +0.5 20,282 - Pf1N1B4_5597 0.27 +0.5 20,451 + -0.5 20,471 - Pf1N1B4_5597 0.43 +0.1 20,648 - Pf1N1B4_5597 0.59 +0.9 20,648 - Pf1N1B4_5597 0.59 +1.0 20,746 + Pf1N1B4_5597 0.67 +0.0 20,747 - Pf1N1B4_5597 0.67 +0.2 21,094 - +0.7 21,210 + -0.1 21,211 - -1.5 21,211 - -0.9 21,211 - -1.5 21,211 - -0.5 21,211 - -0.5 21,316 - Pf1N1B4_5598 0.19 +1.5 21,409 - Pf1N1B4_5598 0.66 +0.1 21,409 - Pf1N1B4_5598 0.66 -1.0 21,471 + -0.5 21,471 + -1.0 21,472 - +0.5 21,472 - +1.9 21,472 - -2.0 21,621 + +0.2 21,934 - -0.5 22,063 + Pf1N1B4_5599 0.46 -1.5 22,064 - Pf1N1B4_5599 0.46 +1.1
Or see this region's nucleotide sequence