Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5327

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5325 and Pf1N1B4_5326 are separated by 183 nucleotidesPf1N1B4_5326 and Pf1N1B4_5327 are separated by 90 nucleotidesPf1N1B4_5327 and Pf1N1B4_5328 are separated by 39 nucleotidesPf1N1B4_5328 and Pf1N1B4_5329 are separated by 219 nucleotides Pf1N1B4_5325 - hypothetical protein, at 74,720 to 75,979 _5325 Pf1N1B4_5326 - hypothetical protein, at 76,163 to 76,324 _5326 Pf1N1B4_5327 - hypothetical protein, at 76,415 to 76,909 _5327 Pf1N1B4_5328 - hypothetical protein, at 76,949 to 77,134 _5328 Pf1N1B4_5329 - hypothetical protein, at 77,354 to 77,896 _5329 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1 2 3at 75.437 kb on - strand, within Pf1N1B4_5325at 75.446 kb on + strand, within Pf1N1B4_5325at 75.447 kb on - strand, within Pf1N1B4_5325at 75.449 kb on + strand, within Pf1N1B4_5325at 75.458 kb on - strand, within Pf1N1B4_5325at 75.496 kb on + strandat 75.497 kb on - strand, within Pf1N1B4_5325at 75.568 kb on + strandat 75.690 kb on + strand, within Pf1N1B4_5325at 75.690 kb on + strand, within Pf1N1B4_5325at 75.800 kb on + strand, within Pf1N1B4_5325at 75.801 kb on - strand, within Pf1N1B4_5325at 75.827 kb on + strand, within Pf1N1B4_5325at 75.828 kb on - strand, within Pf1N1B4_5325at 75.828 kb on - strand, within Pf1N1B4_5325at 75.859 kb on + strandat 75.859 kb on + strandat 75.860 kb on - strandat 75.923 kb on - strandat 75.924 kb on + strandat 75.924 kb on + strandat 75.924 kb on + strandat 75.924 kb on + strandat 75.924 kb on + strandat 75.924 kb on + strandat 75.925 kb on - strandat 75.925 kb on - strandat 75.949 kb on + strandat 75.950 kb on - strandat 75.979 kb on + strandat 75.986 kb on + strandat 75.986 kb on + strandat 76.001 kb on - strandat 76.001 kb on - strandat 76.015 kb on - strandat 76.040 kb on + strandat 76.040 kb on + strandat 76.040 kb on + strandat 76.044 kb on + strandat 76.044 kb on + strandat 76.044 kb on + strandat 76.044 kb on + strandat 76.427 kb on - strandat 76.427 kb on - strandat 76.427 kb on - strandat 76.560 kb on + strand, within Pf1N1B4_5327at 76.561 kb on - strand, within Pf1N1B4_5327at 76.561 kb on - strand, within Pf1N1B4_5327at 76.561 kb on - strand, within Pf1N1B4_5327at 76.648 kb on - strand, within Pf1N1B4_5327at 76.732 kb on - strand, within Pf1N1B4_5327at 76.732 kb on - strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.782 kb on + strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.783 kb on - strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.830 kb on + strand, within Pf1N1B4_5327at 76.831 kb on - strand, within Pf1N1B4_5327at 76.876 kb on + strandat 76.877 kb on - strandat 76.946 kb on - strandat 76.950 kb on + strandat 76.950 kb on + strandat 76.950 kb on + strandat 76.951 kb on - strandat 76.951 kb on - strandat 76.954 kb on + strandat 76.954 kb on + strandat 76.955 kb on - strandat 76.955 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.161 kb on - strandat 77.204 kb on - strandat 77.249 kb on + strandat 77.249 kb on + strandat 77.254 kb on + strandat 77.255 kb on - strandat 77.255 kb on - strandat 77.336 kb on + strandat 77.336 kb on + strandat 77.337 kb on - strandat 77.362 kb on + strandat 77.371 kb on + strandat 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.410 kb on + strand, within Pf1N1B4_5329at 77.411 kb on - strand, within Pf1N1B4_5329at 77.686 kb on + strand, within Pf1N1B4_5329at 77.752 kb on - strand, within Pf1N1B4_5329at 77.781 kb on + strand, within Pf1N1B4_5329at 77.781 kb on + strandat 77.782 kb on - strand, within Pf1N1B4_5329at 77.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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75,437 - Pf1N1B4_5325 0.57 +1.1
75,446 + Pf1N1B4_5325 0.58 -0.4
75,447 - Pf1N1B4_5325 0.58 -0.3
75,449 + Pf1N1B4_5325 0.58 -1.5
75,458 - Pf1N1B4_5325 0.59 +0.9
75,496 + +1.1
75,497 - Pf1N1B4_5325 0.62 -0.0
75,568 + -0.5
75,690 + Pf1N1B4_5325 0.77 -1.5
75,690 + Pf1N1B4_5325 0.77 +0.1
75,800 + Pf1N1B4_5325 0.86 -0.0
75,801 - Pf1N1B4_5325 0.86 +0.1
75,827 + Pf1N1B4_5325 0.88 +0.4
75,828 - Pf1N1B4_5325 0.88 +1.4
75,828 - Pf1N1B4_5325 0.88 +0.1
75,859 + -0.3
75,859 + +1.1
75,860 - -0.6
75,923 - +0.6
75,924 + +1.9
75,924 + +0.1
75,924 + -1.5
75,924 + -1.1
75,924 + -1.3
75,924 + +1.0
75,925 - +1.1
75,925 - -1.2
75,949 + +1.1
75,950 - +1.1
75,979 + -0.9
75,986 + -0.3
75,986 + +1.1
76,001 - +1.1
76,001 - +0.8
76,015 - +0.8
76,040 + -0.1
76,040 + +1.3
76,040 + -1.2
76,044 + +3.2
76,044 + +0.6
76,044 + +0.1
76,044 + +1.6
76,427 - +0.6
76,427 - +0.1
76,427 - +1.1
76,560 + Pf1N1B4_5327 0.29 -0.9
76,561 - Pf1N1B4_5327 0.29 +1.6
76,561 - Pf1N1B4_5327 0.29 +0.6
76,561 - Pf1N1B4_5327 0.29 +0.2
76,648 - Pf1N1B4_5327 0.47 -2.7
76,732 - Pf1N1B4_5327 0.64 -0.4
76,732 - Pf1N1B4_5327 0.64 -1.5
76,782 + Pf1N1B4_5327 0.74 +2.1
76,782 + Pf1N1B4_5327 0.74 +0.3
76,782 + Pf1N1B4_5327 0.74 +1.4
76,782 + Pf1N1B4_5327 0.74 -0.9
76,782 + Pf1N1B4_5327 0.74 -2.3
76,782 + Pf1N1B4_5327 0.74 -0.5
76,782 + Pf1N1B4_5327 0.74 +0.6
76,782 + Pf1N1B4_5327 0.74 +1.9
76,782 + Pf1N1B4_5327 0.74 +0.1
76,782 + Pf1N1B4_5327 0.74 -0.9
76,782 + Pf1N1B4_5327 0.74 +1.9
76,782 + Pf1N1B4_5327 0.74 +0.1
76,783 - Pf1N1B4_5327 0.74 +1.1
76,783 - Pf1N1B4_5327 0.74 -1.2
76,783 - Pf1N1B4_5327 0.74 +0.7
76,783 - Pf1N1B4_5327 0.74 +0.6
76,783 - Pf1N1B4_5327 0.74 +0.6
76,783 - Pf1N1B4_5327 0.74 -0.6
76,783 - Pf1N1B4_5327 0.74 +0.9
76,783 - Pf1N1B4_5327 0.74 -2.3
76,783 - Pf1N1B4_5327 0.74 +1.9
76,830 + Pf1N1B4_5327 0.84 +1.5
76,830 + Pf1N1B4_5327 0.84 +1.3
76,830 + Pf1N1B4_5327 0.84 +1.1
76,830 + Pf1N1B4_5327 0.84 +0.1
76,831 - Pf1N1B4_5327 0.84 +0.1
76,876 + -0.1
76,877 - +0.5
76,946 - -0.6
76,950 + -0.5
76,950 + +0.1
76,950 + -0.9
76,951 - +0.3
76,951 - -1.5
76,954 + -1.1
76,954 + +2.1
76,955 - -0.5
76,955 - +0.6
77,161 - -0.9
77,161 - +0.1
77,161 - +0.4
77,161 - +2.6
77,204 - -0.2
77,249 + -1.5
77,249 + -0.5
77,254 + -1.5
77,255 - +0.1
77,255 - +0.1
77,336 + -0.4
77,336 + +0.5
77,337 - +0.8
77,362 + -1.7
77,371 + -1.3
77,410 + Pf1N1B4_5329 0.10 +2.9
77,410 + Pf1N1B4_5329 0.10 +1.1
77,410 + Pf1N1B4_5329 0.10 -1.7
77,410 + Pf1N1B4_5329 0.10 +0.5
77,411 - Pf1N1B4_5329 0.10 +0.6
77,686 + Pf1N1B4_5329 0.61 -1.7
77,752 - Pf1N1B4_5329 0.73 +0.6
77,781 + Pf1N1B4_5329 0.79 -0.1
77,781 + +0.5
77,782 - Pf1N1B4_5329 0.79 +0.4
77,847 + +0.1

Or see this region's nucleotide sequence