Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4615 and Pf1N1B4_4616 are separated by 28 nucleotides Pf1N1B4_4616 and Pf1N1B4_4617 are separated by 79 nucleotides
Pf1N1B4_4615 - FIG002465: BNR repeat protein, at 5,086,805 to 5,087,872
_4615
Pf1N1B4_4616 - FIG005548: transport protein, at 5,087,901 to 5,090,285
_4616
Pf1N1B4_4617 - hypothetical protein, at 5,090,365 to 5,092,734
_4617
Position (kb) 5087
5088
5089
5090
5091 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5087.001 kb on + strand, within Pf1N1B4_4615 at 5087.051 kb on + strand, within Pf1N1B4_4615 at 5087.289 kb on - strand at 5087.612 kb on - strand, within Pf1N1B4_4615 at 5087.884 kb on - strand at 5087.884 kb on - strand at 5087.901 kb on - strand at 5088.181 kb on - strand, within Pf1N1B4_4616 at 5088.181 kb on - strand, within Pf1N1B4_4616 at 5088.219 kb on + strand, within Pf1N1B4_4616 at 5088.219 kb on + strand, within Pf1N1B4_4616 at 5088.331 kb on - strand, within Pf1N1B4_4616 at 5088.331 kb on - strand, within Pf1N1B4_4616 at 5088.331 kb on - strand, within Pf1N1B4_4616 at 5088.366 kb on - strand, within Pf1N1B4_4616 at 5088.684 kb on - strand, within Pf1N1B4_4616 at 5088.684 kb on - strand, within Pf1N1B4_4616 at 5089.325 kb on + strand, within Pf1N1B4_4616 at 5089.326 kb on - strand, within Pf1N1B4_4616 at 5089.329 kb on + strand, within Pf1N1B4_4616 at 5089.329 kb on + strand, within Pf1N1B4_4616 at 5089.330 kb on - strand, within Pf1N1B4_4616 at 5089.330 kb on - strand, within Pf1N1B4_4616 at 5089.330 kb on - strand, within Pf1N1B4_4616 at 5089.584 kb on + strand, within Pf1N1B4_4616 at 5089.584 kb on + strand at 5089.584 kb on + strand, within Pf1N1B4_4616 at 5089.798 kb on - strand, within Pf1N1B4_4616 at 5089.873 kb on + strand, within Pf1N1B4_4616 at 5089.987 kb on - strand, within Pf1N1B4_4616 at 5089.992 kb on + strand, within Pf1N1B4_4616 at 5089.992 kb on + strand, within Pf1N1B4_4616 at 5089.993 kb on - strand, within Pf1N1B4_4616 at 5089.993 kb on - strand, within Pf1N1B4_4616 at 5089.993 kb on - strand, within Pf1N1B4_4616 at 5089.993 kb on - strand, within Pf1N1B4_4616 at 5090.043 kb on + strand at 5090.044 kb on - strand, within Pf1N1B4_4616 at 5090.110 kb on + strand at 5090.110 kb on + strand at 5090.110 kb on + strand at 5090.501 kb on - strand at 5090.562 kb on - strand at 5090.612 kb on + strand, within Pf1N1B4_4617 at 5090.612 kb on + strand at 5090.612 kb on + strand, within Pf1N1B4_4617 at 5090.633 kb on - strand, within Pf1N1B4_4617 at 5090.678 kb on - strand, within Pf1N1B4_4617 at 5090.678 kb on - strand, within Pf1N1B4_4617 at 5090.678 kb on - strand, within Pf1N1B4_4617 at 5090.920 kb on + strand, within Pf1N1B4_4617 at 5090.995 kb on + strand, within Pf1N1B4_4617 at 5090.995 kb on + strand, within Pf1N1B4_4617 at 5091.092 kb on + strand, within Pf1N1B4_4617 at 5091.092 kb on + strand, within Pf1N1B4_4617 at 5091.141 kb on + strand, within Pf1N1B4_4617 at 5091.247 kb on - strand at 5091.247 kb on - strand, within Pf1N1B4_4617
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 5,087,001 + Pf1N1B4_4615 0.18 -1.2 5,087,051 + Pf1N1B4_4615 0.23 -0.0 5,087,289 - +1.0 5,087,612 - Pf1N1B4_4615 0.76 +0.4 5,087,884 - -1.6 5,087,884 - -2.9 5,087,901 - -2.2 5,088,181 - Pf1N1B4_4616 0.12 -1.6 5,088,181 - Pf1N1B4_4616 0.12 -1.9 5,088,219 + Pf1N1B4_4616 0.13 -1.2 5,088,219 + Pf1N1B4_4616 0.13 -1.2 5,088,331 - Pf1N1B4_4616 0.18 -1.6 5,088,331 - Pf1N1B4_4616 0.18 -1.6 5,088,331 - Pf1N1B4_4616 0.18 -3.6 5,088,366 - Pf1N1B4_4616 0.19 -1.6 5,088,684 - Pf1N1B4_4616 0.33 -0.6 5,088,684 - Pf1N1B4_4616 0.33 -2.9 5,089,325 + Pf1N1B4_4616 0.60 -3.8 5,089,326 - Pf1N1B4_4616 0.60 -0.6 5,089,329 + Pf1N1B4_4616 0.60 -2.2 5,089,329 + Pf1N1B4_4616 0.60 +0.4 5,089,330 - Pf1N1B4_4616 0.60 -2.2 5,089,330 - Pf1N1B4_4616 0.60 -2.6 5,089,330 - Pf1N1B4_4616 0.60 -1.9 5,089,584 + Pf1N1B4_4616 0.71 -2.9 5,089,584 + -0.6 5,089,584 + Pf1N1B4_4616 0.71 +0.7 5,089,798 - Pf1N1B4_4616 0.80 -1.6 5,089,873 + Pf1N1B4_4616 0.83 -1.2 5,089,987 - Pf1N1B4_4616 0.87 +1.0 5,089,992 + Pf1N1B4_4616 0.88 -2.2 5,089,992 + Pf1N1B4_4616 0.88 -2.6 5,089,993 - Pf1N1B4_4616 0.88 -2.2 5,089,993 - Pf1N1B4_4616 0.88 -1.2 5,089,993 - Pf1N1B4_4616 0.88 -2.2 5,089,993 - Pf1N1B4_4616 0.88 -0.6 5,090,043 + -0.6 5,090,044 - Pf1N1B4_4616 0.90 +0.4 5,090,110 + -5.2 5,090,110 + -1.6 5,090,110 + -0.4 5,090,501 - +0.9 5,090,562 - -0.3 5,090,612 + Pf1N1B4_4617 0.10 -0.1 5,090,612 + +1.4 5,090,612 + Pf1N1B4_4617 0.10 +0.4 5,090,633 - Pf1N1B4_4617 0.11 +0.6 5,090,678 - Pf1N1B4_4617 0.13 -1.3 5,090,678 - Pf1N1B4_4617 0.13 -1.8 5,090,678 - Pf1N1B4_4617 0.13 +0.6 5,090,920 + Pf1N1B4_4617 0.23 -0.1 5,090,995 + Pf1N1B4_4617 0.27 +0.4 5,090,995 + Pf1N1B4_4617 0.27 -2.2 5,091,092 + Pf1N1B4_4617 0.31 +0.4 5,091,092 + Pf1N1B4_4617 0.31 +0.4 5,091,141 + Pf1N1B4_4617 0.33 -0.6 5,091,247 - -2.2 5,091,247 - Pf1N1B4_4617 0.37 +1.4
Or see this region's nucleotide sequence